Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1517 ATGGCCAAAAGAACCCGCCGGAAGTTCCTCTTACAGTCCGAGTCTCAAACCGAGCCCAATCATCTTTCTCCGTCGTCTTCCTCCAAGATTCCGTTCCGATCCACCAAAGTACGGAAGATTAAGATTTCCTCCACTCAAGAATCGGCCAAACCACAAATCTCAACTTCCGGCGACGACGATAATACGACCCGACCGTTTCAGAACCCGATCGATCCCGTCAAATCGTTATCGTCTTCGGATGAAATTAGTACAGCGATCGAACATTTACGCCGTTCGGATCATCTTCTGATAAGTCTAATAGATTCATGTGAATCCCCCAATTTCAAATCCAATCCACCGTTTCTAGCCCTAACGAAGAGCATCCTCTACCAGCAGCTCGCTACGAAGGCCGCCGAAGCGATCTACAATCGCTTCGCCGCCCTATGCGGCGGCGAGGCGGGGGTGCTGCCGGACGCCGTGCTCGGACTCACGCCGCAACAGCTGCGAGTAATCGGAGTTTCGGGGAGAAAAGCGAGTTACCTCCATGACTTAGCGACCAATTTCGCAGAGGGCGTTCTATCGAATTCTTCAATTCTGAAAATGGACGACGAGACTGTGTTGAGGACGTTGACGGCGGTGAAAGGAATCGGCGTTTGGTCGGTGCATATGTTCATGATTTTTACTCTGCACCGGCCGGATGTGCTGCCGGTGGGGGATTTGGGGGTGAGAAAAGGAGTGCAGAGGTTGTACGGACTGAAGGAGTTGCCGGCGCCGGTGGAGATGGAGAAACTGTGTGAGAAATGGAAGCCTTACAGATCGATGGGGGCTTGGTATATGTGGAGGCTAATGGAAGTGAAGAAGGAACGCGATTTGTCCGACAAAACTGAAAACAGAAGACTGAAGTCAGTGTAA 891 51.52 MAKRTRRKFLLQSESQTEPNHLSPSSSSKIPFRSTKVRKIKISSTQESAKPQISTSGDDDNTTRPFQNPIDPVKSLSSSDEISTAIEHLRRSDHLLISLIDSCESPNFKSNPPFLALTKSILYQQLATKAAEAIYNRFAALCGGEAGVLPDAVLGLTPQQLRVIGVSGRKASYLHDLATNFAEGVLSNSSILKMDDETVLRTLTAVKGIGVWSVHMFMIFTLHRPDVLPVGDLGVRKGVQRLYGLKELPAPVEMEKLCEKWKPYRSMGAWYMWRLMEVKKERDLSDKTENRRLKSV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70715864 70717159 + Hsped.04g15170.1 Hepe04g1517 568655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1517 296 SMART endo3end 122 277 IPR003265 GO:0006284(InterPro)
Hepe04g1517 296 SUPERFAMILY DNA-glycosylase 111 275 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Hepe04g1517 296 MobiDBLite consensus disorder prediction 12 77 - -
Hepe04g1517 296 FunFam DNA-3-methyladenine glycosylase II 110 224 - -
Hepe04g1517 296 CDD ENDO3c 114 275 IPR003265 GO:0006284(InterPro)
Hepe04g1517 296 Gene3D Hypothetical protein; domain 2 113 224 - -
Hepe04g1517 296 Gene3D - 87 274 - -
Hepe04g1517 296 MobiDBLite consensus disorder prediction 1 77 - -
Hepe04g1517 296 FunFam Probable DNA-3-methyladenine glycosylase 2 210 274 - -
Hepe04g1517 296 Pfam HhH-GPD superfamily base excision DNA repair protein 119 262 IPR003265 GO:0006284(InterPro)
Hepe04g1517 296 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 11 281 IPR051912 GO:0005634(PANTHER)|GO:0006285(PANTHER)|GO:0006307(PANTHER)|GO:0008725(PANTHER)|GO:0032131(PANTHER)|GO:0032993(PANTHER)|GO:0043916(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1517 K01247 - - csv:101219253 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1680 Hepe-Chr1:81937039 Hepe04g1517 Hepe-Chr4:70715864 1.58e-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g979 . . . Bda10g00135 . . . Bma15g00996 . . Cma03g00747 . Car03g00681 . Sed14g1122 . Cpe10g00616 Bhi03g01301 Tan03g1983 Cmetu08g0437 . Hepe04g1517 . . Cla01g01912 Cam01g1999 Cec04g1654 Cco04g1716 Clacu01g2018 Cmu01g1892 Cre04g1568 . . Cone6ag1624 . Lsi01g00672 . . Cme08g00849 . Blo06g00134 . . Bpe10g00120 . . . . Cmo03g00774 . . . . . . . . . . . . . . . . . . . . . . Csa06g03241 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011094 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31