Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1519 ATGGAGATGAGAAGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATAATAATCCATCATCGAATAGGGAATCTTCAACCAAACTGCCCAATTCTGATCATCCAATTGCCGATAGAAGAAGAGATCACACAGTACCCCAGCTCAATTTCTCTCATCAGCAGAATCAAAACCATCACAAACTCAGTCTGCATCAGTATATACACAAACACACAAGAGACCATCCTGAAACAACCCCAGATCCAGTCCAGACTTCAATTTCTCCGCAGATCACCAGCAGCAGATCGATCTCGAGAACACCACCGCTTGCAAGTGCTGCAACGGACAACAATAGTATTATTCCTTCATCGGTTCGATACCGGGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTTGATGGCTGTGGAGAGTTCATGCCAGGTGGAGAAGATGGAACGCCCGAGGCCTTGAAGTGCGCAGCCTGCGAATGCCATCGGAACTTTCACCGGAAAGAGATGAAAGATCACGAGCCCCCACCGCAAGCTTTACCCAGTGGCTTCTTCGTCTCCAACACCGTCAGAAACAACGGCCATCGCACTACTGATCATAGGACACCAGTTCCACTATCCCGTCACCATCAATTGCCGGCCGTACCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCCAGTGAAGATCTGAACATGTATCATCACCAATCTAATAATGGAGCCCGACACCTGTTCAATCAGCAGCCACAACAAATGAAGAAACGACATAGAACAAAATTCACACAGGGACAGAAGGACAAAATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTATGGATGCACAACAACAAACAAGCCATGAAGAAGCAACAAATGTAA 984 46.75 MEMRSEDEEIGTPSPLCYNNPSSNRESSTKLPNSDHPIADRRRDHTVPQLNFSHQQNQNHHKLSLHQYIHKHTRDHPETTPDPVQTSISPQITSSRSISRTPPLASAATDNNSIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKEMKDHEPPPQALPSGFFVSNTVRNNGHRTTDHRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHHQSNNGARHLFNQQPQQMKKRHRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKQQM 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70729031 70730869 + Hsped.04g15190.1 Hepe04g1519 568657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1519 327 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 121 170 IPR006456 -
Hepe04g1519 327 Pfam ZF-HD protein dimerisation region 119 171 IPR006456 -
Hepe04g1519 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 76 321 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe04g1519 327 MobiDBLite consensus disorder prediction 72 111 - -
Hepe04g1519 327 MobiDBLite consensus disorder prediction 15 34 - -
Hepe04g1519 327 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 120 171 IPR006456 -
Hepe04g1519 327 NCBIfam homeobox domain, ZF-HD class 263 320 IPR006455 -
Hepe04g1519 327 FunFam Zinc-finger homeodomain protein 2 251 324 - -
Hepe04g1519 327 SUPERFAMILY Homeodomain-like 257 324 IPR009057 -
Hepe04g1519 327 Gene3D - 250 324 - -
Hepe04g1519 327 MobiDBLite consensus disorder prediction 80 111 - -
Hepe04g1519 327 MobiDBLite consensus disorder prediction 1 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1519 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1519 Hepe-Chr4:70729031 Hepe07g0719 Hepe-Chr7:8640262 1.46e-59 dispersed
Hepe10g0633 Hepe-Chr10:7943709 Hepe04g1519 Hepe-Chr4:70729031 9.94e-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55464 PF04770 ZF-HD_dimer 1.30E-30 No_clan Hepe TF