Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1521 ATGTCCTTCAAAAGCTTTTTTCGCGAGCTAAGAGGGATGAAAGATGGACTCGGAATCAAACCGATGCGAGGGGGAGAAGGGAGGAACTGGCGAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCATGAAGCAATTCAACAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGGGTAGAAGAGAGTGAAACCTCGTGGCCGGCTAGGACTGTTGTCCTTTCTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACAAAGGAAGTTGTTAAAACTCCTGAGCTGTGTGGGAGGCTCACTTTTCCCATTTCACTGAAACAGCCGGGACCTCGGGATTCTCTAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGATGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACGGGTACAGATTTTGTTTTATCCCTTGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTTGGAAAATTAAGGTCTAACTTTTTTGGCACAAGGTTCACCATATATGATAGTCAACCACCAGTTCTCACTGCAGTGCAACAGAATAATCAATCAAATCGTAGGTTTCATGCTAAGCAAGTCTCTCCTAGAATGTCAGCTTGTAACTACACTATAGGGGCAATCTCTTATGAGCTTAATGTTCTCCGGACAAGGGGACCCAGAAGAATGCACTGTGTCATGCACTCGATCCCTGCATCTTGCATTGAACAGGGAGGAAATGCACCGACACCGACCTCATTCGTGTCCTGTTTTGACGATCGTCAGCCCCCTCTACCAGCTTCTAAAGGAAAGGAGCCAGACACAGATTTCAGCTCCACAAGCATCACAGGGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCAATGCTGGTGCTTGAACTTCAAAGGGCGTGTGACAGTGGCTTCTGTGAAGAACTTTCAACTCGTGGCTGATGTAGATCCCGCCCTCAATGTGTCAGTTGAAGAACAAGAAAAGATTATACTGCAGTTTGGTAAAATTGGAAAAGACATCTTTACGATGGATTATCGCTACCCGCTCTCCGCCTTCCAAGCTTTCGCAATCTGCTTGAGCAGCTTTGACACCAAACCAGCATGTGAATAG 1239 46.25 MSFKSFFRELRGMKDGLGIKPMRGGEGRNWRSRTRSHIAPDEVPPQHEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLSCASVCKSWRNITKEVVKTPELCGRLTFPISLKQPGPRDSLIQCYVRRHRATSTYLLYSGLVPSENDGDKLLLAAKRVRRATGTDFVLSLVADDFSWACSTYVGKLRSNFFGTRFTIYDSQPPVLTAVQQNNQSNRRFHAKQVSPRMSACNYTIGAISYELNVLRTRGPRRMHCVMHSIPASCIEQGGNAPTPTSFVSCFDDRQPPLPASKGKEPDTDFSSTSITGAPVQELGESLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70741379 70744604 - Hsped.04g15210.1 Hepe04g1521 568659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1521 412 CDD F-box_AtTLP-like 55 99 - -
Hepe04g1521 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Hepe04g1521 412 PANTHER TUBBY-RELATED 48 411 - -
Hepe04g1521 412 Gene3D - 48 106 - -
Hepe04g1521 412 Pfam Tub family 116 407 IPR000007 -
Hepe04g1521 412 SUPERFAMILY F-box domain 48 99 IPR036047 GO:0005515(InterPro)
Hepe04g1521 412 Gene3D Tubby Protein; Chain A 113 412 IPR025659 -
Hepe04g1521 412 Pfam F-box-like 55 98 IPR001810 GO:0005515(InterPro)
Hepe04g1521 412 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Hepe04g1521 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Hepe04g1521 412 SUPERFAMILY Tubby C-terminal domain-like 104 412 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1521 K19600 - - csv:101221704 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1521 Hepe-Chr4:70741379 Hepe05g1485 Hepe-Chr5:64291328 3.71e-151 dispersed
Hepe01g1672 Hepe-Chr1:81900023 Hepe04g1521 Hepe-Chr4:70741379 3.99e-175 wgd
Hepe04g1521 Hepe-Chr4:70741379 Hepe07g0731 Hepe-Chr7:8734820 3.24e-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT1G76900 71.6 3.6e-174 608.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G76900 70.6 2.4e-170 595.5
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT1G76900 68.2 5.6e-167 584.3
Hepe03g0129 . 13 387 TUB Transcription Factor Family AT1G76900 50.8 1.2e-113 407.1
Hepe05g1485 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 5.2e-112 401.7
Hepe07g0479 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 6.3e-102 367.5
Hepe02g2796 . 176 432 TUB Transcription Factor Family AT1G25280 69.9 4.1e-93 338.2
Hepe10g1960 . 173 430 TUB Transcription Factor Family AT1G25280 67.5 9.2e-93 337.0
Hepe07g0731 . 209 445 TUB Transcription Factor Family AT1G25280 55.8 2.9e-70 262.3
Hepe05g1485 . 154 387 TUB Transcription Factor Family AT1G25280 52.4 9.2e-69 257.3
Hepe03g0129 . 155 387 TUB Transcription Factor Family AT1G25280 53.9 1.2e-68 256.9
Hepe01g1672 . 181 408 TUB Transcription Factor Family AT1G25280 52.7 3.3e-66 248.8
Hepe04g1521 . 176 412 TUB Transcription Factor Family AT1G25280 52.8 1.2e-65 246.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT5G18680 62.5 4.3e-99 358.2
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT5G18680 61.5 1.2e-96 350.1
Hepe10g1960 . 112 430 TUB Transcription Factor Family AT5G18680 53.3 3.5e-85 312.0
Hepe02g2796 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 1.2e-82 303.5
Hepe07g0479 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 2.1e-82 302.8
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT5G18680 52.8 2.4e-78 289.3
Hepe01g1672 . 117 408 TUB Transcription Factor Family AT5G18680 50.3 5.6e-75 278.1
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G18280 58.3 3.0e-140 495.4
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G18280 61.5 5.6e-139 491.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G18280 57.1 9.0e-121 430.6
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.2e-118 421.8
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 6.7e-116 414.5
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 6.7e-116 414.5
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G18280 53.2 9.6e-115 410.6
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 9.0e-113 404.1
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G18280 52.0 3.6e-93 339.0
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G47900 68.5 3.5e-160 561.6
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G47900 68.0 4.6e-160 561.2
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G47900 55.2 2.4e-132 469.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G47900 55.9 2.4e-129 459.1
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G47900 54.3 4.6e-120 428.3
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G47900 51.5 2.8e-117 419.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G47900 55.3 3.1e-116 415.6
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G47900 51.2 3.4e-99 359.0
Hepe03g1679 . 82 307 TUB Transcription Factor Family AT1G16070 59.1 8.3e-71 264.2
Hepe07g0479 . 66 428 TUB Transcription Factor Family AT1G43640 67.5 4.4e-146 514.6
Hepe10g1960 . 67 430 TUB Transcription Factor Family AT1G43640 69.7 5.7e-146 514.2
Hepe02g2796 . 65 432 TUB Transcription Factor Family AT1G43640 65.5 6.1e-140 494.2
Hepe03g0129 . 48 387 TUB Transcription Factor Family AT1G43640 52.6 4.0e-107 385.2
Hepe05g1485 . 49 387 TUB Transcription Factor Family AT1G43640 52.7 4.1e-104 375.2
Hepe01g1672 . 70 408 TUB Transcription Factor Family AT1G43640 50.7 6.2e-100 361.3
Hepe01g1672 . 34 408 TUB Transcription Factor Family AT1G47270 63.1 3.5e-133 471.9
Hepe04g1521 . 33 412 TUB Transcription Factor Family AT1G47270 59.2 4.5e-125 444.9
Hepe07g0731 . 35 445 TUB Transcription Factor Family AT1G47270 54.0 2.0e-117 419.5
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 7.3e-115 411.0
Hepe02g2796 . 48 432 TUB Transcription Factor Family AT1G47270 54.3 2.9e-111 399.1
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT1G47270 50.2 7.8e-109 391.0
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT1G47270 50.7 2.6e-104 375.9
Hepe07g0976 . 1 386 TUB Transcription Factor Family AT1G53320 72.0 2.0e-157 552.4
Hepe05g1485 . 33 387 TUB Transcription Factor Family AT1G53320 50.8 4.6e-98 355.1
Hepe07g0479 . 54 428 TUB Transcription Factor Family AT1G53320 50.3 1.6e-95 346.7
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT3G06380 63.1 6.6e-97 350.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT3G06380 63.1 1.8e-94 342.8
Hepe07g0479 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 2.1e-82 302.8
Hepe02g2796 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 7.4e-80 294.3
Hepe10g1960 . 116 430 TUB Transcription Factor Family AT3G06380 50.2 6.2e-79 291.2
Hepe04g1521 . 118 412 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe01g1672 . 121 408 TUB Transcription Factor Family AT3G06380 51.4 1.7e-76 283.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55465 PF01167 Tub 7.50E-103 CL0395 Hepe TF