Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g1521 | ATGTCCTTCAAAAGCTTTTTTCGCGAGCTAAGAGGGATGAAAGATGGACTCGGAATCAAACCGATGCGAGGGGGAGAAGGGAGGAACTGGCGAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCATGAAGCAATTCAACAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGGGTAGAAGAGAGTGAAACCTCGTGGCCGGCTAGGACTGTTGTCCTTTCTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACAAAGGAAGTTGTTAAAACTCCTGAGCTGTGTGGGAGGCTCACTTTTCCCATTTCACTGAAACAGCCGGGACCTCGGGATTCTCTAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGATGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACGGGTACAGATTTTGTTTTATCCCTTGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTTGGAAAATTAAGGTCTAACTTTTTTGGCACAAGGTTCACCATATATGATAGTCAACCACCAGTTCTCACTGCAGTGCAACAGAATAATCAATCAAATCGTAGGTTTCATGCTAAGCAAGTCTCTCCTAGAATGTCAGCTTGTAACTACACTATAGGGGCAATCTCTTATGAGCTTAATGTTCTCCGGACAAGGGGACCCAGAAGAATGCACTGTGTCATGCACTCGATCCCTGCATCTTGCATTGAACAGGGAGGAAATGCACCGACACCGACCTCATTCGTGTCCTGTTTTGACGATCGTCAGCCCCCTCTACCAGCTTCTAAAGGAAAGGAGCCAGACACAGATTTCAGCTCCACAAGCATCACAGGGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCAATGCTGGTGCTTGAACTTCAAAGGGCGTGTGACAGTGGCTTCTGTGAAGAACTTTCAACTCGTGGCTGATGTAGATCCCGCCCTCAATGTGTCAGTTGAAGAACAAGAAAAGATTATACTGCAGTTTGGTAAAATTGGAAAAGACATCTTTACGATGGATTATCGCTACCCGCTCTCCGCCTTCCAAGCTTTCGCAATCTGCTTGAGCAGCTTTGACACCAAACCAGCATGTGAATAG | 1239 | 46.25 | MSFKSFFRELRGMKDGLGIKPMRGGEGRNWRSRTRSHIAPDEVPPQHEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLSCASVCKSWRNITKEVVKTPELCGRLTFPISLKQPGPRDSLIQCYVRRHRATSTYLLYSGLVPSENDGDKLLLAAKRVRRATGTDFVLSLVADDFSWACSTYVGKLRSNFFGTRFTIYDSQPPVLTAVQQNNQSNRRFHAKQVSPRMSACNYTIGAISYELNVLRTRGPRRMHCVMHSIPASCIEQGGNAPTPTSFVSCFDDRQPPLPASKGKEPDTDFSSTSITGAPVQELGESLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 70741379 | 70744604 | - | Hsped.04g15210.1 | Hepe04g1521 | 568659 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g1521 | 412 | CDD | F-box_AtTLP-like | 55 | 99 | - | - | |
Hepe04g1521 | 412 | ProSitePatterns | Tub family signature 1. | 340 | 353 | IPR018066 | - | |
Hepe04g1521 | 412 | PANTHER | TUBBY-RELATED | 48 | 411 | - | - | |
Hepe04g1521 | 412 | Gene3D | - | 48 | 106 | - | - | |
Hepe04g1521 | 412 | Pfam | Tub family | 116 | 407 | IPR000007 | - | |
Hepe04g1521 | 412 | SUPERFAMILY | F-box domain | 48 | 99 | IPR036047 | GO:0005515(InterPro) | |
Hepe04g1521 | 412 | Gene3D | Tubby Protein; Chain A | 113 | 412 | IPR025659 | - | |
Hepe04g1521 | 412 | Pfam | F-box-like | 55 | 98 | IPR001810 | GO:0005515(InterPro) | |
Hepe04g1521 | 412 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Hepe04g1521 | 412 | PRINTS | Tubby superfamily signature | 340 | 356 | IPR000007 | - | |
Hepe04g1521 | 412 | PRINTS | Tubby superfamily signature | 369 | 388 | IPR000007 | - | |
Hepe04g1521 | 412 | PRINTS | Tubby superfamily signature | 322 | 339 | IPR000007 | - | |
Hepe04g1521 | 412 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Hepe04g1521 | 412 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Hepe04g1521 | 412 | PRINTS | Tubby superfamily signature | 390 | 412 | IPR000007 | - | |
Hepe04g1521 | 412 | ProSitePatterns | Tub family signature 2. | 397 | 412 | IPR018066 | - | |
Hepe04g1521 | 412 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 412 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g1521 | Hepe-Chr4:70741379 | Hepe05g1485 | Hepe-Chr5:64291328 | 3.71e-151 | dispersed | |
Hepe01g1672 | Hepe-Chr1:81900023 | Hepe04g1521 | Hepe-Chr4:70741379 | 3.99e-175 | wgd | |
Hepe04g1521 | Hepe-Chr4:70741379 | Hepe07g0731 | Hepe-Chr7:8734820 | 3.24e-214 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55465 | PF01167 | Tub | 7.50E-103 | CL0395 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g1521 | K19600 | - | csv:101221704 | 748.429 |