Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1521 ATGTCCTTCAAAAGCTTTTTTCGCGAGCTAAGAGGGATGAAAGATGGACTCGGAATCAAACCGATGCGAGGGGGAGAAGGGAGGAACTGGCGAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCATGAAGCAATTCAACAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGGGTAGAAGAGAGTGAAACCTCGTGGCCGGCTAGGACTGTTGTCCTTTCTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACAAAGGAAGTTGTTAAAACTCCTGAGCTGTGTGGGAGGCTCACTTTTCCCATTTCACTGAAACAGCCGGGACCTCGGGATTCTCTAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGATGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACGGGTACAGATTTTGTTTTATCCCTTGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTTGGAAAATTAAGGTCTAACTTTTTTGGCACAAGGTTCACCATATATGATAGTCAACCACCAGTTCTCACTGCAGTGCAACAGAATAATCAATCAAATCGTAGGTTTCATGCTAAGCAAGTCTCTCCTAGAATGTCAGCTTGTAACTACACTATAGGGGCAATCTCTTATGAGCTTAATGTTCTCCGGACAAGGGGACCCAGAAGAATGCACTGTGTCATGCACTCGATCCCTGCATCTTGCATTGAACAGGGAGGAAATGCACCGACACCGACCTCATTCGTGTCCTGTTTTGACGATCGTCAGCCCCCTCTACCAGCTTCTAAAGGAAAGGAGCCAGACACAGATTTCAGCTCCACAAGCATCACAGGGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCAATGCTGGTGCTTGAACTTCAAAGGGCGTGTGACAGTGGCTTCTGTGAAGAACTTTCAACTCGTGGCTGATGTAGATCCCGCCCTCAATGTGTCAGTTGAAGAACAAGAAAAGATTATACTGCAGTTTGGTAAAATTGGAAAAGACATCTTTACGATGGATTATCGCTACCCGCTCTCCGCCTTCCAAGCTTTCGCAATCTGCTTGAGCAGCTTTGACACCAAACCAGCATGTGAATAG 1239 46.25 MSFKSFFRELRGMKDGLGIKPMRGGEGRNWRSRTRSHIAPDEVPPQHEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLSCASVCKSWRNITKEVVKTPELCGRLTFPISLKQPGPRDSLIQCYVRRHRATSTYLLYSGLVPSENDGDKLLLAAKRVRRATGTDFVLSLVADDFSWACSTYVGKLRSNFFGTRFTIYDSQPPVLTAVQQNNQSNRRFHAKQVSPRMSACNYTIGAISYELNVLRTRGPRRMHCVMHSIPASCIEQGGNAPTPTSFVSCFDDRQPPLPASKGKEPDTDFSSTSITGAPVQELGESLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70741379 70744604 - Hsped.04g15210.1 Hepe04g1521 568659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1521 412 CDD F-box_AtTLP-like 55 99 - -
Hepe04g1521 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Hepe04g1521 412 PANTHER TUBBY-RELATED 48 411 - -
Hepe04g1521 412 Gene3D - 48 106 - -
Hepe04g1521 412 Pfam Tub family 116 407 IPR000007 -
Hepe04g1521 412 SUPERFAMILY F-box domain 48 99 IPR036047 GO:0005515(InterPro)
Hepe04g1521 412 Gene3D Tubby Protein; Chain A 113 412 IPR025659 -
Hepe04g1521 412 Pfam F-box-like 55 98 IPR001810 GO:0005515(InterPro)
Hepe04g1521 412 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Hepe04g1521 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Hepe04g1521 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Hepe04g1521 412 SUPERFAMILY Tubby C-terminal domain-like 104 412 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1521 Hepe-Chr4:70741379 Hepe05g1485 Hepe-Chr5:64291328 3.71e-151 dispersed
Hepe01g1672 Hepe-Chr1:81900023 Hepe04g1521 Hepe-Chr4:70741379 3.99e-175 wgd
Hepe04g1521 Hepe-Chr4:70741379 Hepe07g0731 Hepe-Chr7:8734820 3.24e-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55465 PF01167 Tub 7.50E-103 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1521 K19600 - csv:101221704 748.429