Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1523 ATGAATGATTTGATGACGAAATCGTTCCTAAGTTATGTGGAATTAAAGAAACAAGCGCGGAAGGACGCCGCCGTCGAGGGTGGCGCCTTCGATATTGAATCCGGCGGTCAAGAATTCAATCCGACGGAAGAACAGACCCTGTCTCTGTTTTTCGATAAAGTCGACGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAATCGACATTGAGAAACTAAATCAAGAAGCGAAATCAACCCACAACGCAAAAATCCTCCGCGGATTAAGAGACCGAATCGACTCCGATATGATCTCGATTCTGCGCAGAGCAAAGCTCTTGAAGGAAAAATTGGCGAATCTGGACCAATCCAACGCCGCGAACCGGATGATCTCGGTCGCGTACGGCGAAGGAACCGCCGTGGACAGAACAAGAACCGCAATCACGAATGGATTGAGGGTGAAATTGAGGGAAATGATGAACGAATTTCAGGGTGTGAGAGAAAAAGTAGTGGCGGATCACAGGGAAGATTTGAGGAGAAGGTATTTCGGTGCGATTGGGGAACAACCCAGTGAAGAACAGATGGAGAAGATAATGTGTGGGAAATTGAAATTGGAATCGTTTGGAGGGAAAGTGGAAGTGAGTGAGGCCGAGTTAGGGGAGCGAGTGAGGCACGAGTCGGTGATGGATATACAGAGGAGTTTGAATAAACTTCATCAAGTTTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATTGAGGATATTGAGGAGAATGTGGCGAAAGGAGGGAGGTTCATCAATGGCGGAACTCGAAGTCTTTACTATGCGAATCAGATGAAGAAGAAGAACAAGATATGGATGTATTGGCTTTGGGCTGTCATTTTTGTTATATTGCTTGTTTGTGTTGTTGCAATGTTGGTTTGTTGA 921 45.28 MNDLMTKSFLSYVELKKQARKDAAVEGGAFDIESGGQEFNPTEEQTLSLFFDKVDEIKTQMEETTNLLIDIEKLNQEAKSTHNAKILRGLRDRIDSDMISILRRAKLLKEKLANLDQSNAANRMISVAYGEGTAVDRTRTAITNGLRVKLREMMNEFQGVREKVVADHREDLRRRYFGAIGEQPSEEQMEKIMCGKLKLESFGGKVEVSEAELGERVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKIEDIEENVAKGGRFINGGTRSLYYANQMKKKNKIWMYWLWAVIFVILLVCVVAMLVC 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70752625 70753545 - Hsped.04g15230.1 Hepe04g1523 568661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1523 306 CDD SynN 50 192 IPR006011 GO:0016020(InterPro)
Hepe04g1523 306 Gene3D - 207 305 - -
Hepe04g1523 306 PANTHER SYNTAXIN 50 295 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe04g1523 306 SMART SynN_4 42 169 IPR006011 GO:0016020(InterPro)
Hepe04g1523 306 FunFam Syntaxin 132 205 305 - -
Hepe04g1523 306 Gene3D - 42 175 - -
Hepe04g1523 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Hepe04g1523 306 SMART tSNARE_6 207 274 IPR000727 -
Hepe04g1523 306 Coils Coil 54 77 - -
Hepe04g1523 306 CDD SNARE_syntaxin1-like 218 271 - -
Hepe04g1523 306 Pfam Syntaxin 50 247 IPR006011 GO:0016020(InterPro)
Hepe04g1523 306 SUPERFAMILY t-snare proteins 46 267 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1523 Hepe-Chr4:70752625 Hepe07g1958 Hepe-Chr7:63486193 2.05e-56 dispersed
Hepe04g1523 Hepe-Chr4:70752625 Hepe05g0449 Hepe-Chr5:5903970 3.01e-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1523 K08486 - csv:101217836 498.819