Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1525 ATGAGTCCAGCTCAGAACCTAATGAAGCAGAGGAAGGATGGATACGAACCGTCTGATACAGAGACAGAATGGCAAGAAAGCCCTTGGAATGATCCCAAGGAGAAGAAACTTGTACTGGATTACAATAATCGACGAACTGATTCGGCAGTAGCCAAGAAGTTTGGGATTGTGGCCAATGTTTCTCCTCCTGGTTTGAGAAGAAATGGTGGCAAAACGCCTCACAGGCTAGCCAAAGACGACAGTGTTCTTGTTATGCTTCAGAGAAACATCAGCCCCTTGTCGAGAGCAGAAAGAAGAAGGCATGAATCTCCTTTTAAAGCTGCGGCGGAGGAAATTGGAAGCTCTAGCACGAGGTCAAGAAAAGAGGAGAACAAGTTGAATTATTCTCATGGGGGTAATAGAATAAGTCAAAAACCAAGCTATAATAGGAGATCGGTGACTGCTCCAAGGTTGAGGATGAGAGATGAACATATGAATGCTGTTAATGAATCATCTCAAAGGAGGGAGAGAGCTGCTCCACCCTTGCAGGTCAACTCCATCCTGCAACAGCCAAAGGAGGTTTCCCAGGTGAACTCTCTATCTGTTGGGGAAATGAATGAGATGATTGCAGATGGAAGGATTTATAGAGGTTCGACTTTTAATGAACCGGTGGTTGAAAGCACGGGGTCAATCTCGCCGGGGGATATATTCTTTTCGCGTGATGGCTTGCCTACTGGAATGAATAACAATGTCACAGCAAAGAGAAATGCGTTCAAAAACTATATTAGTCCAAAGCCTAACTTTGTGTCTAAAAAGAATGACGATACTTATAATCAAGTTGAAGTAAATGCTAATGGTAGAGGAGTTTCTTCTGCTGGAGTAGTTTTGTCAACGACCACAACCAATAGTGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCATTGAAAGTAGTAAGATGAGTGATGTGAGTGGAAGGACAAGTGAAAGTACAAGAAGGTTTATAGCCAATAGACGAAAGAAGAAGAATGAGATATGGTTTTCTTGTATGAGGAAAGGGGGGACTTGCAGGACATCAAAATCGCCTGAAAAGGAAGCATTTGATGAAGCTTCATTCATTGAAAAGGCAAATGTTGTTGAATACTTGAAACCCTTCTGGGCGGATCAGCATCGACCGGTTTCCTTAAATGGATTCACTTTCCATAAGAATGAGGCCCAACTTCTCAAGCAATTAGTTTCACAAGACAGATTTCCCCACATTCTGTTCAAAGGTCCGCGCGGATCTGGCAAACGAGTGCTCATGATGGCTCTTCTCCGTGAGATATATGGTGATTCATGTTGGAATGTTTCTCATGATTTGCGACGTTTCCAGATTCAGGAAAGAAAGCTGACACAGGTCTTTGTTCCATTAACATCAAGTGCTCATCATGTGGAACTAAATTTAAGCTCAGAAGCAAATGCTAAGTATGCTTTGCTGGGATTAGCCAAAGAAATAGGCAGTGAATATTCCATTAATGTGGAAGCAAGAAATGTCCATCCGAAGGCCAATTTCAAAGTGGTAGTCCTTTTAGATGTAGACAAAACTGCAGAGGATATTCAACACTTGCTTAGGTGGATTATGGATGGCTACAAGGATGCCTGCAAAGTAGTACTCTGTTGTGAAGACGATAGAGGCATCCTTGAATCAGTGATAAGCCGCTGCAAAGTTATCAAAATTAACCCTCCTGTAACTCATGAAATTATGAATGTACTTATCCAAATAGCAGAGAAGGAGGAATTTGACTTACCCATGAACTTTGCTTCTAAGATTGCTACTAAAGCAAAGCAAAACCTGAGAAAAGCAATCATGGCGCTTGAAGCATGCAGGGCACACAATTATCCATTTTCTGATGACCAGCCAATCCCTATTGGATGGGAGGATGCCGTGGTAGAACTCACAGCACATATCCTCGAAGACCCATCAAATCCAAGATTACACCTAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGATTCGGTTCATCCGAAACTAATTCTCCAGAAGCTTGTGGAACAATTTCTGAAAAGAATTGAGCTGAGATCAAGGAGGGAACTTTATTACTGGCATGCTTATTATAAGAAGAGACTCCCAACTGAAACTGGAACAAGTGCTTTACCCAAATTGGAAGAGTTTGTAGCAAAGTTCATGGGCATGTACAGGAAGAGCTCCACCAACGTGGTTTATGATCGATAA 2214 41.82 MSPAQNLMKQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVAKKFGIVANVSPPGLRRNGGKTPHRLAKDDSVLVMLQRNISPLSRAERRRHESPFKAAAEEIGSSSTRSRKEENKLNYSHGGNRISQKPSYNRRSVTAPRLRMRDEHMNAVNESSQRRERAAPPLQVNSILQQPKEVSQVNSLSVGEMNEMIADGRIYRGSTFNEPVVESTGSISPGDIFFSRDGLPTGMNNNVTAKRNAFKNYISPKPNFVSKKNDDTYNQVEVNANGRGVSSAGVVLSTTTTNSAAVSRENSSRISIESSKMSDVSGRTSESTRRFIANRRKKKNEIWFSCMRKGGTCRTSKSPEKEAFDEASFIEKANVVEYLKPFWADQHRPVSLNGFTFHKNEAQLLKQLVSQDRFPHILFKGPRGSGKRVLMMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSEANAKYALLGLAKEIGSEYSINVEARNVHPKANFKVVVLLDVDKTAEDIQHLLRWIMDGYKDACKVVLCCEDDRGILESVISRCKVIKINPPVTHEIMNVLIQIAEKEEFDLPMNFASKIATKAKQNLRKAIMALEACRAHNYPFSDDQPIPIGWEDAVVELTAHILEDPSNPRLHLVKEKIQKLLVDSVHPKLILQKLVEQFLKRIELRSRRELYYWHAYYKKRLPTETGTSALPKLEEFVAKFMGMYRKSSTNVVYDR 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70779746 70783917 + Hsped.04g15250.1 Hepe04g1525 568663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1525 737 Pfam Replication factor C subunit 3, C-terminal domain 632 723 - -
Hepe04g1525 737 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 378 728 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Hepe04g1525 737 Gene3D - 571 628 - -
Hepe04g1525 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 625 IPR027417 -
Hepe04g1525 737 SUPERFAMILY post-AAA+ oligomerization domain-like 631 726 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Hepe04g1525 737 MobiDBLite consensus disorder prediction 94 148 - -
Hepe04g1525 737 Gene3D - 378 569 IPR027417 -
Hepe04g1525 737 FunFam replication factor C subunit 3 570 628 - -
Hepe04g1525 737 MobiDBLite consensus disorder prediction 129 144 - -
Hepe04g1525 737 Gene3D - 631 726 - -
Hepe04g1525 737 MobiDBLite consensus disorder prediction 1 35 - -
Hepe04g1525 737 Pfam RCF1/5-like, AAA+ ATPase lid domain 576 616 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1525 K10756 - - csv:101218071 1300.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0589 Hepe-Chr4:58817701 Hepe04g1525 Hepe-Chr4:70779746 8.60e-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38