Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1544 ATGTTGTGGAAGGAAGTGCTTGTGTTCTTAGCTCAAAACTACTTTGATACTGCAGTGGCAGCAGTTCTTTCCATAGCTATTTTAGTGTTGGTTTCGAAAGTTTGCTGGAGGTTGAGGAGCAAGAATGTTGGAGGAATTCCTGGTCATTTGGGGTTACCTTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGTACCAAAGGGTGTTACCACTTTGTCAGGCTCCGCCGGTTATGGCATGGTAGGTGGTTCAAGACAAGGCTATTTGGAAAGATCCATGTGTTTGTTCCAAGTGCAGAAGGTGCAAAGGCAATATTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGCAGATGCTGTTGGAGAGAAGAGTTTACTATGCGTTTCCCATGACAACCACAGAAGGATTAGGCGTCTTCTAGCCAATCCTTTCTCCTTGACTTCTCTGTCTAAGTTTGTCAAAGAATTTGACGACATGCTCTCCAAAAGGCTAAAGAAACTAGTAAAAGATGGGAAAAGTTTTGTACTGCTTGACTTTAGCATGAAGATAGCATTCGATTCCATGTGCAATATGCTAATGAGTCAAAGAGATGAATCGACGCTAAGACAGATTGAGAAAGACTGTATAGCCGTCTCTGATGCCATGTTATCTTTACCATTCATGATACCAGGAACTAGGTACTACAAAGGCATCAAGGCACGAAATCGACTCATGGAAAGGTTTGGAGAGGTAATTTCCAGGCGGCGGAGGGGAGAGGAGTCACCAGAAGACTTCCTGCAGTCAATGTTGCAGAGAGATTCATATCCTCCTGATGAAAAGCTGGATGACTCAGAGATAATGGATAACCTTTTGACACTGATAATTGCAGGCCAAACCACCACAGCTGCTGCTATGATGTGGAGTATCAAGTTCCTAGACGAGAACAAAGAGGCCCAAGAAAGGTTGCGGGAAGAACAATTATCAATTCTACGAAAGAAAGGAGATGGAGAATTGCTTAGCCTTGAAGATCTTAACAAAATGTCCTATGGTTCAAAGGTCGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCTCGTGTGGCACTAAAGGATTGCAGATTAGAAGGCACAGGGAACCGGGAACCCCATCCAACTCATTTTGCTGGTGACATGCAGGAAATTCAAAAGCCATACAGTTTCATACCTTTTGGATCTGGACCCAGGACCTGTCTAGGAATTAACATGGCCAAATTAACAATGTTGGTCTTTTTGCACAGAATGACTGGAGGGTACAAGTGGACGGTTGATGATCCAAATCCTTGCCTTGAAAAGAAGGCACATATCCCTAGGCTGAGAAGCGGCTGTCCCATTACTTTGAAGACCTTGTAA 1398 43.28 MLWKEVLVFLAQNYFDTAVAAVLSIAILVLVSKVCWRLRSKNVGGIPGHLGLPFVGETFSFLSANNSTKGCYHFVRLRRLWHGRWFKTRLFGKIHVFVPSAEGAKAIFANDFVQFNKGYVKSMADAVGEKSLLCVSHDNHRRIRRLLANPFSLTSLSKFVKEFDDMLSKRLKKLVKDGKSFVLLDFSMKIAFDSMCNMLMSQRDESTLRQIEKDCIAVSDAMLSLPFMIPGTRYYKGIKARNRLMERFGEVISRRRRGEESPEDFLQSMLQRDSYPPDEKLDDSEIMDNLLTLIIAGQTTTAAAMMWSIKFLDENKEAQERLREEQLSILRKKGDGELLSLEDLNKMSYGSKVVKETLRMSNVLLWFPRVALKDCRLEGTGNREPHPTHFAGDMQEIQKPYSFIPFGSGPRTCLGINMAKLTMLVFLHRMTGGYKWTVDDPNPCLEKKAHIPRLRSGCPITLKTL 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70972275 70975559 - Hsped.04g15440.1 Hepe04g1544 568682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1544 465 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 406 415 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Hepe04g1544 465 PRINTS E-class P450 group I signature 413 436 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PRINTS E-class P450 group I signature 403 413 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PANTHER CYTOCHROME P450 26 47 434 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Hepe04g1544 465 SUPERFAMILY Cytochrome P450 36 463 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 Pfam Cytochrome P450 386 447 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 Pfam Cytochrome P450 48 379 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 Gene3D Cytochrome P450 37 465 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PRINTS P450 superfamily signature 413 424 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PRINTS P450 superfamily signature 404 413 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Hepe04g1544 465 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1544 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1544 Hepe-Chr4:70972275 Hepe10g1973 Hepe-Chr10:56755433 4.66e-73 dispersed
Hepe10g0620 Hepe-Chr10:7700552 Hepe04g1544 Hepe-Chr4:70972275 2.06e-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26