Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1547 ATGTTTAGTTTCAAAGAAATGCCTCCGTCTGCTTCTTCTCTGTTTGCAGCCTATGCTTCATTCGCCACCTCTATGATGATGATCCGCTCCATGACCAACGACATTCTTCCTCCCCAGCTCTTCTCCTTCATCTCCTCCATTTTCTCCTATTTTTTCCCCCATAAGTCTTCTCCCCAAACCACTCTTGTCATCGAGAATCAATCCAACTACTCCAACAATCAGGTCTATGAATCTGCAGAGATTTACCTCCGTACCAAAATCACCCACTCCATGGATCGTCTCAAGGTCTCCAAATCCCCAAGGCAGCAGAAAGTTACCCTCTCCATGGACAAGGATCAACAAATTGTCGATCATTTCGAAGACATTCAACTCAAATGGCGATTCGTCTCCGAGAAGAAGCAGAATGATAATGTACTCAGCGAGGAGAAACGCTATTACGAGCTTGTATTCGATAAGAAATTCATGGACAAAGTCATCGATTTCTATTTTCCTTACGTCTTACAGAGAGCCAAGGAGATTAAGGAGATGGAAAATGTTGCCAAACTCTGTAGCCAGAATTGTTCCTACGGTGGTGACGATTCTGGCGAGGATGGATGTCGTGGGAATTGGGGATCCATCAGTCTGGAGCATCCCTCCACGTTTGATACTCTGGCGATGGATCCTGGCTTGAAGAAGATGATAATCGACGATTTGGATCGATTCGTGAAGAGGAAGGAGTTTTATCGGAAGGTTGGGAAGGCTTGGAAGAGAGGCTATTTGTTGTACGGTCCGCCTGGTACCGGGAAATCGAGCTTAATCGCCGCCATGGCTAATTACCTCAAGTTTGATGTCTACGATTTAGATCTCACGGATATCGATTGTAATTACCAGCTAAGAAGATCGTTACTCTCTACTACGAATCGCTCGATTTTGGTGATTGAGGATATAGACTGCAGTGTGAATTTACAGAATAGGGAAAATAGCGACGGCGAGAATCTCGAATCTCCTAAAAGCAAGTTGACGCTGTCTGGTATGCTGAATTTCATGGATGGATTATGGTCGAGTTGCGGCGACGAGAGGATCATCGTTCTCACGACGAATCACAAGGACAGATTGGATCCAGCGCTGTTGCGGCCGGGTCGAATGGACGTTCACATAAACTTGACCTACTGCACCTCGAAGGCGTTCGAGGTTTTGGCCAGCAACTACCTCGGCGGCGGAGCGATTCGTCACCCGCTGTACGAAGAAATTAAAGGGTTAATCGATTGCGCTAACGTGACTCCGGCGGAGGTTGCGGAGGAGCTGATGAAGGGCGAGGACGTTGACATGGTTATGGAGGGTTTAACCAAGTTTGTGAAGGAAAAGAGAGAGGAACAGCAGAGGGACGAAAATGAGACGCCGGAGGAAGAAGACGATAATGAGATTGTGGAAGAAGAAAAAGTGAAGAGAAGAACAAACGGCGGCGGGGTTAGAAGGCACAGAAGAGGACTTAGAATTGGAAAAAGCCGTCGTCGGTCGCCGTCGTTAGTTAACTAA 1515 46.93 MFSFKEMPPSASSLFAAYASFATSMMMIRSMTNDILPPQLFSFISSIFSYFFPHKSSPQTTLVIENQSNYSNNQVYESAEIYLRTKITHSMDRLKVSKSPRQQKVTLSMDKDQQIVDHFEDIQLKWRFVSEKKQNDNVLSEEKRYYELVFDKKFMDKVIDFYFPYVLQRAKEIKEMENVAKLCSQNCSYGGDDSGEDGCRGNWGSISLEHPSTFDTLAMDPGLKKMIIDDLDRFVKRKEFYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLDLTDIDCNYQLRRSLLSTTNRSILVIEDIDCSVNLQNRENSDGENLESPKSKLTLSGMLNFMDGLWSSCGDERIIVLTTNHKDRLDPALLRPGRMDVHINLTYCTSKAFEVLASNYLGGGAIRHPLYEEIKGLIDCANVTPAEVAEELMKGEDVDMVMEGLTKFVKEKREEQQRDENETPEEEDDNEIVEEEKVKRRTNGGGVRRHRRGLRIGKSRRRSPSLVN 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71022569 71024375 + Hsped.04g15470.1 Hepe04g1547 568685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1547 504 CDD RecA-like_BCS1 227 379 - -
Hepe04g1547 504 MobiDBLite consensus disorder prediction 447 504 - -
Hepe04g1547 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 430 IPR027417 -
Hepe04g1547 504 Gene3D - 205 379 IPR027417 -
Hepe04g1547 504 SMART AAA_5 248 385 IPR003593 GO:0016887(InterPro)
Hepe04g1547 504 Pfam ATPase family associated with various cellular activities (AAA) 252 382 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe04g1547 504 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe04g1547 504 Gene3D - 380 451 - -
Hepe04g1547 504 PANTHER BCS1 AAA-TYPE ATPASE 21 452 IPR050747 -
Hepe04g1547 504 MobiDBLite consensus disorder prediction 479 495 - -
Hepe04g1547 504 Pfam Domain associated at C-terminal with AAA 36 129 IPR025753 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1547 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1545 Hepe-Chr4:70995087 Hepe04g1547 Hepe-Chr4:71022569 3.19e-140 dispersed
Hepe04g1547 Hepe-Chr4:71022569 Hepe07g0707 Hepe-Chr7:8469411 5.15e-148 dispersed
Hepe04g1546 Hepe-Chr4:71012891 Hepe04g1547 Hepe-Chr4:71022569 2.85e-198 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111