Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1559 ATGCTTCGTCCCCACAAAAATCTATGCAGGTTCATCTATGGCTTGCAGAACCACGACCTACGTTCAGCATCCTCTTATCAGCACAACCAGAGAAACCATGGCGCGAACGAGAAAGATGGTAACGAAAAACCCCAATTGTATTTCTACAAGAGTAGAGGCCAACACATTCTTACAAACCCACGAATTCTCGACTCTATCGTTCGAAAATCCGCCATACGGCCGAGCGACACGGTCTTGGAGATCGGACCCGGCACCGGAAATCTGACATTGAAGCTTCTCGAAGCTTCCCAAAAGGTCATAGCCATTGAAATCGATAGAAGAATGGTCGAGGTTCTTCACAGACGCGTGGCGGAGCATGAATTAGAAGATCGCCTTTGTGTCATATCCAAAGATGCATTGAAATGTGAGTTCCCTCCTTTCGATCTCGTCGTGGCCAACATCCCTTATGGGATTTCTTCACCGCTTGTGGTCAAATTGGTATATGGGGCAATTCCATTTCGGAGTGCCACGCTTCTACTTCAGAAGGAGTTTGCACGGCGGTTGTTGGCAGATCCCGGTGACTCTGAGTACAACCGTTTGGCTGTAAATGTGAAGCTGGTGGCGGACGTGGAACATGTCATGGATGTAAGCAAGAGGGATTTTGTTCCTTGTCCTAAAGTGGATTCTTCTGTGGTGATAATCCGTCCCAAGAAGGAAGTTCCAGATGTGAACTTGGAAGAATGGCGGGCTTTCACTAGAACTTGCTTTGGCAAGAAGAATAAGACACTTGGGGCAACATTCAAGCAGAAGAGGAAGCTGATGGACCTAATGCACTCAAATTCTGAGAATTCTAATGGTCGAGTTGAAGAAGAGGGATGTTCTTCATCTTCAGAGAAGGAGTTTAGTTCGTTCAAGGAGAAGATCATTGAGGTTATAAAATCTGGGGACTTTGAAGATAAGAGACCTGCAAAGTTGTGTAATGAGGAGTTGCTGCATTTGCTGGCGTTGTTTAACCAAGCTGGAATATATTTTCAGGATGGAGAAAGAAGAGCCTCAGCTGATGCCTACAGTTCAGAACTAGAAGAGTAA 1068 45.79 MLRPHKNLCRFIYGLQNHDLRSASSYQHNQRNHGANEKDGNEKPQLYFYKSRGQHILTNPRILDSIVRKSAIRPSDTVLEIGPGTGNLTLKLLEASQKVIAIEIDRRMVEVLHRRVAEHELEDRLCVISKDALKCEFPPFDLVVANIPYGISSPLVVKLVYGAIPFRSATLLLQKEFARRLLADPGDSEYNRLAVNVKLVADVEHVMDVSKRDFVPCPKVDSSVVIIRPKKEVPDVNLEEWRAFTRTCFGKKNKTLGATFKQKRKLMDLMHSNSENSNGRVEEEGCSSSSEKEFSSFKEKIIEVIKSGDFEDKRPAKLCNEELLHLLALFNQAGIYFQDGERRASADAYSSELEE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71114662 71116047 - Hsped.04g15590.1 Hepe04g1559 568697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1559 355 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 49 328 IPR011530 GO:0000179(InterPro)|GO:0006364(InterPro)
Hepe04g1559 355 PANTHER DIMETHYLADENOSINE TRANSFERASE 22 332 IPR001737 GO:0000179(PANTHER)|GO:0005739(PANTHER)|GO:0031167(PANTHER)
Hepe04g1559 355 CDD AdoMet_MTases 77 160 - -
Hepe04g1559 355 Pfam Ribosomal RNA adenine dimethylase 50 265 IPR001737 -
Hepe04g1559 355 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 48 334 IPR001737 -
Hepe04g1559 355 Gene3D - 234 338 - -
Hepe04g1559 355 Gene3D Vaccinia Virus protein VP39 48 233 IPR029063 -
Hepe04g1559 355 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 78 105 IPR020596 GO:0000154(InterPro)|GO:0000179(InterPro)
Hepe04g1559 355 FunFam rRNA adenine N(6)-methyltransferase 48 232 - -
Hepe04g1559 355 SMART rADcneu6 62 231 IPR020598 GO:0000154(InterPro)|GO:0000179(InterPro)
Hepe04g1559 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 265 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1559 K14191 - - csv:101203673 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1359 Hepe-Chr2:17284363 Hepe04g1559 Hepe-Chr4:71114662 2.50e-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1056 . . Bda04g00036 . . . Bma09g00094 . . . . Cma07g00458 . Car07g00404 Sed06g1238 Cpe19g00832 . Bhi03g00905 Tan03g2037 Cmetu02g1762 . Hepe04g1559 . . Cla01g01947 Cam01g2035 Cec04g1693 Cco04g1758 Clacu01g2057 Cmu01g1934 Cre04g1608 . . Cone6ag1654 . Lsi01g00637 . . Cme08g00893 Blo05g00813 . . . . Bpe06g00036 . . . . Cmo07g00455 . . . . . . . . . . . . . . . . . . . . . Csa06g03289 Chy02g00607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011898 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30