Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g1564 | ATGTCTGGCTTTTTCACTTTAGGTGGTGGAGGTGGAGGTGGAGGAAGAGAAGATCAACAAGACCAACATCACAACAACAACACAAATCGCCCCAACGAAATTGCTCACCCGGATAACTTGTTTTGGTACAAGGGAAACGTTGAGCTATGGCAACAACAACAGCAGCATCAGCAGCATCAGCATCAACAAGAGCAAGCTCTCTTTCATACACGTACTCATCACCACCACCACAATAACAACAACAACGACAACCCCTACACTTCTAGTAGTGTACCACGGCGGAGCTCAGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATTACATCCGGATCGGGAGGAGGTGGAATCAGCTGCCAAGACTGTGGTAACCAAGCCAAAAAAGACTGTATCCACATGAGGTGTAGGACATGCTGCAAGAGCCGAGGCTTCGATTGCACAACTCATGTCAGAAGCACTTGGGTTCCTGCAGCCAAACGCCGCGAACGCCACGAGAAACTCACCGCCTTACAAACTCAACAACACCAATTTCAACTCAACAATAATAATCCCAAACGCCACAGAGATTACAATCCCACTTCCACACCTTCTCTTGCCTGCACTCACATCCCCACCAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCGCCGGAATTGAACTCTCCGGCTGTGTTCCGTTGCGTCCGTGTCACCTCCGCCGACGATACCGACGACCAATACGCCTATCAAACGGCGGTGAACATCGGAGGACATCTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATATTCCACCGGGTGAAACCTCGTCCGGCGGTGCTGGGAGTAGTAGTGGAATGCAACCATTGAATTTCATAGCCGGAGCCACCGATGCAGCCACCGCCAGCGGTGGCTCCTCCGCTGCATTACCCTTGCTTGATCCATCTTCCTTATATTCAACTCCGCTCAATAGCTACATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA | 1011 | 49.36 | MSGFFTLGGGGGGGGREDQQDQHHNNNTNRPNEIAHPDNLFWYKGNVELWQQQQQHQQHQHQQEQALFHTRTHHHHHNNNNNDNPYTSSSVPRRSSDESSSRSGNFMMITSGSGGGGISCQDCGNQAKKDCIHMRCRTCCKSRGFDCTTHVRSTWVPAAKRRERHEKLTALQTQQHQFQLNNNNPKRHRDYNPTSTPSLACTHIPTNNTSGLEIGNFPPELNSPAVFRCVRVTSADDTDDQYAYQTAVNIGGHLFKGILYDQGPENNYIPPGETSSGGAGSSSGMQPLNFIAGATDAATASGGSSAALPLLDPSSLYSTPLNSYMAGTQFFLPPRS | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 71167132 | 71168445 | - | Hsped.04g15640.1 | Hepe04g1564 | 568702 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g1564 | 336 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Hepe04g1564 | 336 | NCBIfam | putative zinc finger domain, LRP1 type | 119 | 161 | IPR006510 | - | |
Hepe04g1564 | 336 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 330 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Hepe04g1564 | 336 | Pfam | Domain of unknown function (DUF702) | 117 | 265 | - | - | |
Hepe04g1564 | 336 | NCBIfam | LRP1 C-terminal domain | 217 | 264 | IPR006511 | - | |
Hepe04g1564 | 336 | MobiDBLite | consensus disorder prediction | 81 | 110 | - | - | |
Hepe04g1564 | 336 | MobiDBLite | consensus disorder prediction | 71 | 110 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g1564 | Hepe-Chr4:71167132 | Hepe08g0153 | Hepe-Chr8:1338012 | 8.61e-45 | dispersed | |
Hepe01g1646 | Hepe-Chr1:81667132 | Hepe04g1564 | Hepe-Chr4:71167132 | 1.94e-62 | wgd | |
Hepe10g0123 | Hepe-Chr10:1239227 | Hepe04g1564 | Hepe-Chr4:71167132 | 3.36e-72 | wgd | |
Hepe04g1564 | Hepe-Chr4:71167132 | Hepe07g0694 | Hepe-Chr7:8284447 | 1.23e-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55467 | PF05142 | DUF702 | 1.30E-65 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g1564 | K27807 | - | csv:101207689 | 440.269 |