Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1564 ATGTCTGGCTTTTTCACTTTAGGTGGTGGAGGTGGAGGTGGAGGAAGAGAAGATCAACAAGACCAACATCACAACAACAACACAAATCGCCCCAACGAAATTGCTCACCCGGATAACTTGTTTTGGTACAAGGGAAACGTTGAGCTATGGCAACAACAACAGCAGCATCAGCAGCATCAGCATCAACAAGAGCAAGCTCTCTTTCATACACGTACTCATCACCACCACCACAATAACAACAACAACGACAACCCCTACACTTCTAGTAGTGTACCACGGCGGAGCTCAGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATTACATCCGGATCGGGAGGAGGTGGAATCAGCTGCCAAGACTGTGGTAACCAAGCCAAAAAAGACTGTATCCACATGAGGTGTAGGACATGCTGCAAGAGCCGAGGCTTCGATTGCACAACTCATGTCAGAAGCACTTGGGTTCCTGCAGCCAAACGCCGCGAACGCCACGAGAAACTCACCGCCTTACAAACTCAACAACACCAATTTCAACTCAACAATAATAATCCCAAACGCCACAGAGATTACAATCCCACTTCCACACCTTCTCTTGCCTGCACTCACATCCCCACCAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCGCCGGAATTGAACTCTCCGGCTGTGTTCCGTTGCGTCCGTGTCACCTCCGCCGACGATACCGACGACCAATACGCCTATCAAACGGCGGTGAACATCGGAGGACATCTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATATTCCACCGGGTGAAACCTCGTCCGGCGGTGCTGGGAGTAGTAGTGGAATGCAACCATTGAATTTCATAGCCGGAGCCACCGATGCAGCCACCGCCAGCGGTGGCTCCTCCGCTGCATTACCCTTGCTTGATCCATCTTCCTTATATTCAACTCCGCTCAATAGCTACATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 1011 49.36 MSGFFTLGGGGGGGGREDQQDQHHNNNTNRPNEIAHPDNLFWYKGNVELWQQQQQHQQHQHQQEQALFHTRTHHHHHNNNNNDNPYTSSSVPRRSSDESSSRSGNFMMITSGSGGGGISCQDCGNQAKKDCIHMRCRTCCKSRGFDCTTHVRSTWVPAAKRRERHEKLTALQTQQHQFQLNNNNPKRHRDYNPTSTPSLACTHIPTNNTSGLEIGNFPPELNSPAVFRCVRVTSADDTDDQYAYQTAVNIGGHLFKGILYDQGPENNYIPPGETSSGGAGSSSGMQPLNFIAGATDAATASGGSSAALPLLDPSSLYSTPLNSYMAGTQFFLPPRS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71167132 71168445 - Hsped.04g15640.1 Hepe04g1564 568702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1564 336 MobiDBLite consensus disorder prediction 1 37 - -
Hepe04g1564 336 NCBIfam putative zinc finger domain, LRP1 type 119 161 IPR006510 -
Hepe04g1564 336 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 330 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Hepe04g1564 336 Pfam Domain of unknown function (DUF702) 117 265 - -
Hepe04g1564 336 NCBIfam LRP1 C-terminal domain 217 264 IPR006511 -
Hepe04g1564 336 MobiDBLite consensus disorder prediction 81 110 - -
Hepe04g1564 336 MobiDBLite consensus disorder prediction 71 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1564 Hepe-Chr4:71167132 Hepe08g0153 Hepe-Chr8:1338012 8.61e-45 dispersed
Hepe01g1646 Hepe-Chr1:81667132 Hepe04g1564 Hepe-Chr4:71167132 1.94e-62 wgd
Hepe10g0123 Hepe-Chr10:1239227 Hepe04g1564 Hepe-Chr4:71167132 3.36e-72 wgd
Hepe04g1564 Hepe-Chr4:71167132 Hepe07g0694 Hepe-Chr7:8284447 1.23e-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55467 PF05142 DUF702 1.30E-65 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1564 K27807 - csv:101207689 440.269