Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1567 ATGATGCGGAGATTTCAGTTGACTCTGGTTCTCGCCGTGATCACCCTCGCCGCCCTCAACGGAGCTGAAGCTTCAACTTCCACTTCCGCTTTCGTTCAGAACGTCATCTACTCTAACAGGATTGCCATCTTCTCCAAATCCTACTGCCCATATTGCATGGCTGCCAAACGTATATTCAGTGAACTCCAAGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGATGATGGATCTCAAATTCAGAGTGTCCTACTAGATCTGACAGGCAAGCGCACTGTTCCTCAAATTTTTGTGAATGGCAAGCATATTGGCGGCTCTGATGATCTTAAAGCTGCAGTTGCTAGTGGTCAGTTGCAGAAACTTCTTGCTTCTAGTTGA 378 46.03 MMRRFQLTLVLAVITLAALNGAEASTSTSAFVQNVIYSNRIAIFSKSYCPYCMAAKRIFSELQEKPFVVELDLRDDGSQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAAVASGQLQKLLASS 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71190198 71191578 - Hsped.04g15670.1 Hepe04g1567 568705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1567 125 Pfam Glutaredoxin 41 103 IPR002109 -
Hepe04g1567 125 CDD GRX_GRXh_1_2_like 40 121 - -
Hepe04g1567 125 ProSitePatterns Glutaredoxin active site. 43 58 IPR011767 -
Hepe04g1567 125 PRINTS Glutaredoxin signature 100 113 IPR014025 -
Hepe04g1567 125 PRINTS Glutaredoxin signature 41 59 IPR014025 -
Hepe04g1567 125 PRINTS Glutaredoxin signature 86 99 IPR014025 -
Hepe04g1567 125 ProSiteProfiles Glutaredoxin domain profile. 29 125 - -
Hepe04g1567 125 PANTHER GLUTAREDOXIN 2 23 123 - GO:0005737(PANTHER)|GO:0015038(PANTHER)|GO:0034599(PANTHER)
Hepe04g1567 125 SUPERFAMILY Thioredoxin-like 30 123 IPR036249 -
Hepe04g1567 125 NCBIfam glutaredoxin 41 122 IPR011899 -
Hepe04g1567 125 Gene3D Glutaredoxin 22 125 - -
Hepe04g1567 125 FunFam Glutaredoxin 2 23 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1567 K03676 - - csv:101222985 209.534
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1567 Hepe-Chr4:71190198 Hepe09g0434 Hepe-Chr9:3915697 5.69e-38 dispersed
Hepe04g1567 Hepe-Chr4:71190198 Hepe02g3090 Hepe-Chr2:80055129 3.34e-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28