Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1569 ATGGAATTCTTCTCTCTTCAACTCAAAACCATCTCTCTCCACTTCTTCTTCCTCTTTCTATCTTCGTCTCACTTATTTTCGCCCTCTAATTCCTGCAATCCCACAGACAAACAAGCACTTCTCGAATTCAAACGCAAAATCACTTCCGACCCTTCACAGCTACTGCTTTCATGGAAACCCCCCACCGACTGCTGCTCCTCCTGGGACGGCGTCGCCTGCGATTCCTCCGGCAGAGTCACCAACCTCACCCGCCCCGGAATTGTCTCCGCCGTCGACTTCATTGCCGACACTTACATGTCTGGATCTCTCTCCCCTTTTCTTGGAAACTTGTCGTCTCTTCAATTTCTCGACCTCAGCAATCTCAAAGACATCAACGGACGCATTCCATTGGAATTTGGCAAGTTATCACGACTCACCCATTTGTTTCTCGATTCAAATAAACTCATGGGTTCGATTCCAACAACTTTTGGGTGTCTTTTTCGATTGGAAAAACTCTATCTTGGCAACAATCAGCTCTCTGGAATCATCCCCCCTTCGATTTTTGAGCATTTCAAATCCCTTTCAGAATTGGGTCTTTCCGGAAATAGACTCTCTGGGTCGATTCCCAATTCAATTGGGAAGCTAATTCAGCTCAAAAATCTCGATCTTCATGCCAACAATTTCTCTGGAAGCATTCCTACGAGTATTGGTAACCTTAAAAGTCTCAAATACCTCGATTTGTCTGAAAATGAGATAACAGGGAGCATTCCTAAATCAATCGGTGGACTCTCTGATTTGGTTTTGCTTTACCTTAATCATAACAAGATTACCGGAAGTATTCCCTCTTCAGTATCCGGACTTAGTTCTATGATCTTCTGCCGTTTGTCGGAAAATCGGCTAAGTGGTCGGTTACCGGCGTCTGTCGGTAAGCTTGAAAAGATCCAAAGGCTGATTCTTGAGAACAACAAGCTTACAGGGAAATTGCCTTCTTCCATTGGCCGTTTGACTACTTTAACTGACCTGTTCTTCTCTAACAATCTTTTCACCGGCAAGATTCCCAAGACTTTTGGCAATTTGGAAAACCTCCAAACTCTGGACTTGTCCAGAAATTTGATTTCTGGTGGAATTCCTCATCAGTTATCCAAATTACAGAGATTACAGAGCTTGGATCTTTCGTTTAATCCTCTCGGGTTGCGATCAATACCAAATTGGTTTGCAGAGATGAAACTTTTCAGGCTATTTTTGGCTAAAACTGGGATTGAAGGTCAACTTCCAAAATGGCTGTCTTCATCCTCAGTTTCAGTTCTTGATTTCTCAACGAATCGATTAACAGGGCCATTACCCCATTGGATTGGGAATATGACCAATCTTTCATTCCTTAACCTTTCAAACAACGGATTTCATTCATCAATCCCAGCTGAATTCAAAAACCTTTTATTATTAATGGATCTTGATCTTCATTCCAATCGCTTTACAGGGTGCCTCGACAACATATTTTCAAAAGGGGTTCAAGACCCACTTGGCCATTTCAATTCCATTGATGTTTCTCACAATCATTTCAGTGGTTGTATTGATGAGGAGATAGGAAACAGTGGAGCAATGTCTTCAATCAAATCGCTTGTTTTGTCGAACAATGAATTGGAAGGGCAAATCCCCAAGTCGTTGTCGGAGCTAAAAGAGTTACAGGTGCTGGGGATGGCCGGAAACCGTCTTTCCGGTGAAATTCCGGCGGAGCTGGGAGATGCGGCGGAATTGACCACGATTTTGCTTTCGAAGAACAAGCTGTGTGGGACGATTCCAGGACAAGTGTTGAATTTGGAGAAGCTTCGGAAATTCGACGTGTCGGAAAATAGACTATGTGGGAAAATTCCAGCGCATAAAGCGCATTTCCCTGTCTCTTCATTCAAGCATAATCGTGGACTCTGTGGACTTCCACTTCCTCCCTGCAAGCATTCTTAG 1938 43.5 MEFFSLQLKTISLHFFFLFLSSSHLFSPSNSCNPTDKQALLEFKRKITSDPSQLLLSWKPPTDCCSSWDGVACDSSGRVTNLTRPGIVSAVDFIADTYMSGSLSPFLGNLSSLQFLDLSNLKDINGRIPLEFGKLSRLTHLFLDSNKLMGSIPTTFGCLFRLEKLYLGNNQLSGIIPPSIFEHFKSLSELGLSGNRLSGSIPNSIGKLIQLKNLDLHANNFSGSIPTSIGNLKSLKYLDLSENEITGSIPKSIGGLSDLVLLYLNHNKITGSIPSSVSGLSSMIFCRLSENRLSGRLPASVGKLEKIQRLILENNKLTGKLPSSIGRLTTLTDLFFSNNLFTGKIPKTFGNLENLQTLDLSRNLISGGIPHQLSKLQRLQSLDLSFNPLGLRSIPNWFAEMKLFRLFLAKTGIEGQLPKWLSSSSVSVLDFSTNRLTGPLPHWIGNMTNLSFLNLSNNGFHSSIPAEFKNLLLLMDLDLHSNRFTGCLDNIFSKGVQDPLGHFNSIDVSHNHFSGCIDEEIGNSGAMSSIKSLVLSNNELEGQIPKSLSELKELQVLGMAGNRLSGEIPAELGDAAELTTILLSKNKLCGTIPGQVLNLEKLRKFDVSENRLCGKIPAHKAHFPVSSFKHNRGLCGLPLPPCKHS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71196399 71198520 + Hsped.04g15690.1 Hepe04g1569 568707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1569 645 Pfam Leucine rich repeat 210 269 IPR001611 GO:0005515(InterPro)
Hepe04g1569 645 Pfam Leucine rich repeat 136 197 IPR001611 GO:0005515(InterPro)
Hepe04g1569 645 Pfam Leucine rich repeat 330 389 IPR001611 GO:0005515(InterPro)
Hepe04g1569 645 SMART LRR_sd22_2 159 189 - -
Hepe04g1569 645 SMART LRR_sd22_2 328 354 - -
Hepe04g1569 645 SMART LRR_sd22_2 376 396 - -
Hepe04g1569 645 SMART LRR_sd22_2 135 154 - -
Hepe04g1569 645 SMART LRR_sd22_2 256 282 - -
Hepe04g1569 645 SMART LRR_sd22_2 232 253 - -
Hepe04g1569 645 PANTHER OS01G0149700 PROTEIN 405 523 IPR052941 -
Hepe04g1569 645 SMART LRR_typ_2 159 183 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 551 575 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 471 494 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 256 280 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 184 208 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 232 255 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 352 375 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 447 470 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 599 630 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 304 328 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 135 158 IPR003591 -
Hepe04g1569 645 SMART LRR_typ_2 376 400 IPR003591 -
Hepe04g1569 645 FunFam Piriformospora indica-insensitive protein 2 202 299 - -
Hepe04g1569 645 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 104 201 - -
Hepe04g1569 645 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Hepe04g1569 645 PRINTS Leucine-rich repeat signature 352 365 - -
Hepe04g1569 645 PRINTS Leucine-rich repeat signature 235 248 - -
Hepe04g1569 645 SUPERFAMILY L domain-like 403 642 - -
Hepe04g1569 645 Gene3D Ribonuclease Inhibitor 391 645 IPR032675 -
Hepe04g1569 645 Gene3D Ribonuclease Inhibitor 93 390 IPR032675 -
Hepe04g1569 645 Gene3D Ribonuclease Inhibitor 29 87 IPR032675 -
Hepe04g1569 645 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 368 645 - -
Hepe04g1569 645 SUPERFAMILY RNI-like 99 437 - -
Hepe04g1569 645 Pfam Leucine Rich Repeat 426 447 IPR001611 GO:0005515(InterPro)
Hepe04g1569 645 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Hepe04g1569 645 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Hepe04g1569 645 Pfam Leucine Rich Repeat 307 328 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1569 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1569 Hepe-Chr4:71196399 Hepe04g1975 Hepe-Chr4:74598665 1.85e-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31