Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1570 ATGGAGACACCTTTGAAGATGAGTTTCAATACCCAAAACTCTGCTGCATCCCCCTCCTCCGACTACATCTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGATGACTTTGTTGTTGATGAACAAGGAGAAGTAGAAGAAGTAGAAGAAGAACACAAAAGCAAAAACTCCTCTGTTTCTGTTTCTGCTCCCCTGAAATTGCAACTTCAACAGCACCACGAGAGCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGATTTCTGGTCTGTTTCCTCCACCGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGATTCCTCCCAGCAAGAATACTCTCCCGCACCACCCTGCTCTGTTGTTTTTACAGACAAACCCACAAATTACCACAAGGAAACAAACCCACTTTCTCTCAACACCCCATTTCCTTCCAAGCCCAGAACCAAGCGACCCAAAATCTCCCGCCGAGTCTGGTCCTTAATGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAGGAATTCCGCGGTGGAGGGCTCCGGCAAGGTCCAGCCGCCACGGCGATGCAATCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCCGGTCCACTAGGAGCAAAGACGCTGTGTAATGCCTGTGGCGTCCGGTTCAAATCCGGCCGGCTTTTCCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGAGGTAAACAAGAAACGGAGAAACCCCACTCCGGTCCGGACCCGACCGTAGGAGTAGAGTAG 849 50.06 METPLKMSFNTQNSAASPSSDYIFVDQLLNFSNEEDDFVVDEQGEVEEVEEEHKSKNSSVSVSAPLKLQLQQHHESDQNSNHSSTNSSEDDFWSVSSTDFEDLEWLSHLVADSSQQEYSPAPPCSVVFTDKPTNYHKETNPLSLNTPFPSKPRTKRPKISRRVWSLMNSISSPSLYSPPAKKPKRNSAVEGSGKVQPPRRCNHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRGKQETEKPHSGPDPTVGVE 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71201897 71203216 + Hsped.04g15700.1 Hepe04g1570 568708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1570 282 Gene3D - 192 270 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe04g1570 282 FunFam GATA transcription factor 191 274 - -
Hepe04g1570 282 CDD ZnF_GATA 200 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 SMART GATA_3 195 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 258 282 - -
Hepe04g1570 282 PANTHER GATA TRANSCRIPTION FACTOR 25 267 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 174 201 - -
Hepe04g1570 282 MobiDBLite consensus disorder prediction 39 93 - -
Hepe04g1570 282 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 Pfam GATA zinc finger 201 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 137 160 - -
Hepe04g1570 282 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 257 - -
Hepe04g1570 282 MobiDBLite consensus disorder prediction 258 272 - -
Hepe04g1570 282 PIRSF Txn_fac_GATA_plant 6 276 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 58 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1570 Hepe-Chr4:71201897 Hepe10g0381 Hepe-Chr10:4185213 5.45e-29 dispersed
Hepe04g1570 Hepe-Chr4:71201897 Hepe07g0688 Hepe-Chr7:8121845 5.35e-52 wgd
Hepe04g1570 Hepe-Chr4:71201897 Hepe08g0974 Hepe-Chr8:9152296 2.90e-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55468 PF00320 GATA 7.40E-16 CL0167 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1570 - - - 0.0