Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1570 ATGGAGACACCTTTGAAGATGAGTTTCAATACCCAAAACTCTGCTGCATCCCCCTCCTCCGACTACATCTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGATGACTTTGTTGTTGATGAACAAGGAGAAGTAGAAGAAGTAGAAGAAGAACACAAAAGCAAAAACTCCTCTGTTTCTGTTTCTGCTCCCCTGAAATTGCAACTTCAACAGCACCACGAGAGCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGATTTCTGGTCTGTTTCCTCCACCGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGATTCCTCCCAGCAAGAATACTCTCCCGCACCACCCTGCTCTGTTGTTTTTACAGACAAACCCACAAATTACCACAAGGAAACAAACCCACTTTCTCTCAACACCCCATTTCCTTCCAAGCCCAGAACCAAGCGACCCAAAATCTCCCGCCGAGTCTGGTCCTTAATGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAGGAATTCCGCGGTGGAGGGCTCCGGCAAGGTCCAGCCGCCACGGCGATGCAATCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCCGGTCCACTAGGAGCAAAGACGCTGTGTAATGCCTGTGGCGTCCGGTTCAAATCCGGCCGGCTTTTCCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGAGGTAAACAAGAAACGGAGAAACCCCACTCCGGTCCGGACCCGACCGTAGGAGTAGAGTAG 849 50.06 METPLKMSFNTQNSAASPSSDYIFVDQLLNFSNEEDDFVVDEQGEVEEVEEEHKSKNSSVSVSAPLKLQLQQHHESDQNSNHSSTNSSEDDFWSVSSTDFEDLEWLSHLVADSSQQEYSPAPPCSVVFTDKPTNYHKETNPLSLNTPFPSKPRTKRPKISRRVWSLMNSISSPSLYSPPAKKPKRNSAVEGSGKVQPPRRCNHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRGKQETEKPHSGPDPTVGVE 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71201897 71203216 + Hsped.04g15700.1 Hepe04g1570 568708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1570 282 Gene3D - 192 270 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe04g1570 282 FunFam GATA transcription factor 191 274 - -
Hepe04g1570 282 CDD ZnF_GATA 200 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 SMART GATA_3 195 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 258 282 - -
Hepe04g1570 282 PANTHER GATA TRANSCRIPTION FACTOR 25 267 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 174 201 - -
Hepe04g1570 282 MobiDBLite consensus disorder prediction 39 93 - -
Hepe04g1570 282 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 Pfam GATA zinc finger 201 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 137 160 - -
Hepe04g1570 282 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 257 - -
Hepe04g1570 282 MobiDBLite consensus disorder prediction 258 272 - -
Hepe04g1570 282 PIRSF Txn_fac_GATA_plant 6 276 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Hepe04g1570 282 MobiDBLite consensus disorder prediction 58 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1570 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1570 Hepe-Chr4:71201897 Hepe10g0381 Hepe-Chr10:4185213 5.45e-29 dispersed
Hepe04g1570 Hepe-Chr4:71201897 Hepe07g0688 Hepe-Chr7:8121845 5.35e-52 wgd
Hepe04g1570 Hepe-Chr4:71201897 Hepe08g0974 Hepe-Chr8:9152296 2.90e-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0381 . 83 366 C2C2-Gata Transcription Factor Family AT5G25830 53.5 3.3e-68 255.8
Hepe01g2218 . 98 332 C2C2-Gata Transcription Factor Family AT5G25830 54.8 1.2e-62 237.3
Hepe01g2218 . 98 292 C2C2-Gata Transcription Factor Family AT3G60530 51.8 2.1e-43 172.9
Hepe07g0688 . 30 294 C2C2-Gata Transcription Factor Family AT3G51080 51.8 8.3e-53 204.5
Hepe04g1570 . 99 263 C2C2-Gata Transcription Factor Family AT4G36240 52.6 1.8e-39 159.8
Hepe06g1713 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.3e-135 480.3
Hepe06g1094 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-135 477.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55468 PF00320 GATA 7.40E-16 CL0167 Hepe TF