Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1574 ATGAGGATACTTTGTGATTCCTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGCGCAACCTGTGATGCCAAGGTGCACATGTGCAATAAACTTGCGAGCCGCCATGTAAGGGTTGGGCTAGCGAATCCGAGTGAAGTTTCAAGCTGTGATATATGTGAAAATGCACCAGCTTTCTTCTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGCAAAAGAATGCACGAGAGATTTCTTCGGCTGAGGCAGAGAGTCGAGTTTCCTGGGGATAAACAAAATGATATCAAGGACCTAAATTTACAAGCAATGGAACAAGTTGAAACAGTGAGAGGCCAAAGTGAAGATAAGGGTGAGAATGAGAAGAAGGAAAATTTGAGGGTCTCAGTTGTTGAAGAATATTCAAATGGAGATGGCCATTCAAAGAGAGGAAATAAAGTGATTGATTTGAACATCTAG 504 42.66 MRILCDSCESAAATLFCAADEAALCATCDAKVHMCNKLASRHVRVGLANPSEVSSCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHERFLRLRQRVEFPGDKQNDIKDLNLQAMEQVETVRGQSEDKGENEKKENLRVSVVEEYSNGDGHSKRGNKVIDLNI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71240552 71241842 - Hsped.04g15740.1 Hepe04g1574 568712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1574 167 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 Pfam B-box zinc finger 4 34 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 Gene3D Classic Zinc Finger 1 93 - -
Hepe04g1574 167 FunFam B-box zinc finger protein 19 2 92 - -
Hepe04g1574 167 CDD Bbox1_BBX-like 4 47 IPR049808 -
Hepe04g1574 167 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 141 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1574 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1574 Hepe-Chr4:71240552 Hepe07g0738 Hepe-Chr7:8820933 9.13e-67 dispersed
Hepe04g1574 Hepe-Chr4:71240552 Hepe02g0478 Hepe-Chr2:4666861 5.03e-21 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0511 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.9e-56 216.9
Hepe10g0202 . 1 241 C2C2-CO-like Transcription Factor Family AT5G24930 58.8 4.6e-47 185.7
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 1.4e-86 317.0
Hepe08g0372 . 69 278 C2C2-CO-like Transcription Factor Family AT3G07650 54.6 4.0e-46 182.6
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 2.4e-83 306.2
Hepe08g0372 . 87 278 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 1.8e-46 183.7
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 2.4e-83 306.2
Hepe08g0372 . 87 278 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 1.8e-46 183.7
Hepe02g0478 . 1 203 C2C2-CO-like Transcription Factor Family AT1G75540 58.0 8.8e-53 204.5
Hepe01g1643 . 1 215 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 4.4e-52 202.2
Hepe08g0983 . 1 205 C2C2-CO-like Transcription Factor Family AT1G75540 52.4 4.0e-45 179.1
Hepe07g0738 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.8e-57 217.2
Hepe04g1574 . 1 128 C2C2-CO-like Transcription Factor Family AT2G21320 74.2 1.2e-50 196.4
Hepe07g0738 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 4.6e-59 224.6
Hepe04g1574 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 60.8 1.0e-50 196.8
Hepe02g0478 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 2.2e-53 206.1
Hepe08g0983 . 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.5 1.4e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55470 PF00643 zf-B_box 9.90E-06 No_clan Hepe TF