Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1574 ATGAGGATACTTTGTGATTCCTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGCGCAACCTGTGATGCCAAGGTGCACATGTGCAATAAACTTGCGAGCCGCCATGTAAGGGTTGGGCTAGCGAATCCGAGTGAAGTTTCAAGCTGTGATATATGTGAAAATGCACCAGCTTTCTTCTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGCAAAAGAATGCACGAGAGATTTCTTCGGCTGAGGCAGAGAGTCGAGTTTCCTGGGGATAAACAAAATGATATCAAGGACCTAAATTTACAAGCAATGGAACAAGTTGAAACAGTGAGAGGCCAAAGTGAAGATAAGGGTGAGAATGAGAAGAAGGAAAATTTGAGGGTCTCAGTTGTTGAAGAATATTCAAATGGAGATGGCCATTCAAAGAGAGGAAATAAAGTGATTGATTTGAACATCTAG 504 42.66 MRILCDSCESAAATLFCAADEAALCATCDAKVHMCNKLASRHVRVGLANPSEVSSCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHERFLRLRQRVEFPGDKQNDIKDLNLQAMEQVETVRGQSEDKGENEKKENLRVSVVEEYSNGDGHSKRGNKVIDLNI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71240552 71241842 - Hsped.04g15740.1 Hepe04g1574 568712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1574 167 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 Pfam B-box zinc finger 4 34 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Hepe04g1574 167 Gene3D Classic Zinc Finger 1 93 - -
Hepe04g1574 167 FunFam B-box zinc finger protein 19 2 92 - -
Hepe04g1574 167 CDD Bbox1_BBX-like 4 47 IPR049808 -
Hepe04g1574 167 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 141 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1574 Hepe-Chr4:71240552 Hepe07g0738 Hepe-Chr7:8820933 9.13e-67 dispersed
Hepe04g1574 Hepe-Chr4:71240552 Hepe02g0478 Hepe-Chr2:4666861 5.03e-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55470 PF00643 zf-B_box 9.90E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1574 - - - 0.0