Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1592 ATGGAGCAGTGGAAGACTGGAGATTTCTCTCAATCTATTGTTGCAGCTGATTTAGTTCCTTCCTCTTCGAGTCGCCACAATAACAACCAACTTCCTGATTCCAGGTTAAGAACAGATGCGGAAGTAAAAGATCCAATAGCGGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAACGAGCACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTTACGGACACCATCCAAATGCTGAAGGATTTAACTGGCGATGTCAGTAGATTAAAGGCTGACTATGAAGCTCTTTCTGAAGAATCACGCGAGCTAACCCAGGAGAAAAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATCGAAAATCTAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCGTGGGCTACAATGGATCCTTCGGTTGTCATGGGGCCACCATATTCATACCCAGTTCCTGTTCCCGTTCCCCCAGGACCAATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTTTTTGGAAATCAGAATCCTGGTGCTATTCCTAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGAACAGCCCTCTGCCCAATATGCTTCCAATTCGCGTATCTCTAGCAAACAAGATTCCAGAAGTAAGTCGTCGGATCGGCATAGGCGTAGTAATGCGGAAAGATGTGACGGTTCTAACGATGTAGCAACTGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGTGAGTTTATTGCTTTTAAAACCCCACATAAGTATTTGTAGATCAAATAAGAACATTATTGAATATGTTTTCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCGCAGAGGAAAGAAAAAAGTGTTACAGACTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGCGTTAGCGACATACCGAAACAGAACAACTGAATTCAAGGTTGTTTCTTTCTTCTCCAACCAAATATTGAGTTCAGGACTTTACATTCAGAGCTTTATTCTCACATCAAAATGTGAGCAGTCATTCCTCGGTTCAGTAACTAGGGCGATCAATCATGAGGTGCGAGATATTGCGGCTGTTATCGGTATCTAA 1209 42.85 MEQWKTGDFSQSIVAADLVPSSSSRHNNNQLPDSRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTGDVSRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIEQPSAQYASNSRISSKQDSRSKSSDRHRRSNAERCDGSNDVATDLELKMPGSSTQQVSLLLLKPHISICRSNKNIIEYVFRMHPLEVRKVSSRRGKKKVLQTVVLRVGFLHPKFFKIAPLTALATYRNRTTEFKVVSFFSNQILSSGLYIQSFILTSKCEQSFLGSVTRAINHEVRDIAAVIGI 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71405335 71408671 - Hsped.04g15920.1 Hepe04g1592 568730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1592 402 Coils Coil 95 143 - -
Hepe04g1592 402 Gene3D - 47 150 IPR036638 GO:0046983(InterPro)
Hepe04g1592 402 Pfam Helix-loop-helix DNA-binding domain 49 99 IPR011598 GO:0046983(InterPro)
Hepe04g1592 402 CDD bHLH_AtILR3_like 53 127 - -
Hepe04g1592 402 PANTHER TRANSCRIPTION FACTOR BHLH121 23 276 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Hepe04g1592 402 MobiDBLite consensus disorder prediction 236 259 - -
Hepe04g1592 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 118 IPR036638 GO:0046983(InterPro)
Hepe04g1592 402 MobiDBLite consensus disorder prediction 222 262 - -
Hepe04g1592 402 SMART finulus 54 104 IPR011598 GO:0046983(InterPro)
Hepe04g1592 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1311 Hepe-Chr1:78330567 Hepe04g1592 Hepe-Chr4:71405335 2.65e-11 dispersed
Hepe04g1592 Hepe-Chr4:71405335 Hepe07g1156 Hepe-Chr7:25726839 1.23e-09 dispersed
Hepe09g0127 Hepe-Chr9:1013728 Hepe04g1592 Hepe-Chr4:71405335 1.80e-09 transposed
Hepe04g1592 Hepe-Chr4:71405335 Hepe08g0945 Hepe-Chr8:8751741 3.91e-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55474 PF00010 HLH 8.40E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1592 - - - 0.0