Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1596 ATGGCGGAGATCAAGCTCATCTTGGCTCGGCCCATTCAATCGGCGGACCAAATCACCAAGGCGGCCGACGAAGCCACCAACTGCAAGCAGGAGTGCGCCGAACTCAAGTCCAAGACCGAAAAACTCGCTACCCTTCTCCGTCAGGCGGCTCGAGCCAGTTCCGATCTCTACGAACGTCCGGCTACTCGGATCATCAACGAAACCGCACAAGCCCTAGATAAAGCTCTCTCCTTGGTCCTCAAATGTAGCGGCAATGGACTTATGAAGCGCGTCTTCACCATCATCCCCGCCGCCGCCTTCCGTAAATCCTGCTCCCAGCTCGAGAATTCCATCGGTGATGTTTCCTGGTTGCTCCGAGTTTCCGCCTCTGCTGAGGATCGCGGCGACGAGTATTTGGGTCTTCCCCCAATCGCTGCCAACGAACCGATTCTAGGTCTCATTTGGGAACAGATTGCGATTCTCTCCACTGGCTCGCCGGATGATCGAGCCGACGCGGCGGCGTCGCTCGTTTCCTTGGCGAAAGACAGCGAGAGATATGGGAAACGGATAATCGAAGAAGGCGGCGTTGGGGCGCTGCTGAAATTGCTGAAAGAAGGTAAGGTTGAAGGTCAAGAAAACGCTGCGAATGCAATTGGGCTTCTAGGTCGTGACCCTGAGAATGTTGAAGCCATGATTCAGGCTGGTGTCTGCCAGGTGTTTGCGAAAATTCTGAAAGAAGGTCCGATGAAAGTTCAGGCTGTGGTTGCTTGGGCTGTATCGGAATTGGTTTCTAGTTACCCTAAATGCCAAGATCTCTTCGAACAACACTATATGATTCGCTCTCTTGTTGGTCATCTTGCGTTTGAAACTATTCAGGAACATAGCAAATACAATATCACTGTCAATAAAGCCACCTCCATTCATGCTCTGGTAATGGCGAGCACCCCCAAATCGAACAATGTGTATAAAGCTGCTGAGGAAGATGATCGACAGCCCCATAGCCGGATTCTTCATCCGATGGGAAATCGAACCCCGAATCAGATGCACGCCGTGGTTACCAACACGATAAACATGCTCTCTGGCGGGTCGGCGGCGGCTGCAACTGCAACTCCACAGGCCAGCAGCCATGGTGGGGAAGGCCACAGCCTTAGCAGCAATGGGAAGCACATTCTTCCACATCATTCCCCTTACCTTCATCATGCTCATTCCGGCCCGAGCGCGAAGGGGAGGGAACTCGAGGACCCGGCGACGAAAACCAAGATCAAAGCCATGGCAGCCAAAGCCCTTTGGCAGCTTGCCAAAGGGAACTTGACAGTCTGCCGTAGTATAACAGAATCAAGAGCTCTGTTGTGTTTTGCTGTTCTACTTGAGAAGGGGGAACAAAATGTGCGGCATAACTCTGCAATGGCATTGATGGAGATCACTGCCATGGCGGAGCACGACCCCGATTTGAGAAGATCCGCCTTCAAGCCGACTTCGCCTGCTTGCAGAGCCGTTGTGGAACAGTTGCTGAAGATCATTGAAAAGGAAGATGCAGATCTCCTCATTCCCTGTATCAAATCGACCGGACATTTGGCAAGGACGTTCCGAGCGACCGAGAAGAGAATGATCACCCCATTGGTGCAGCTTCTCGACGAAAGAGAGACGGAGATCTCGAAGGAGGCCTGCATTGCTCTCACCAAATTCGCCTGCTCAGAAAACTTCCTCCACATCAACCACTGCGAGGAAATTATAGCTGCAGGAGGAGCAAAACACTTAGTCCAGCTAGTGTACTTTGGGGAACATAGTGTTCAAAATGCAGCTGTAACTCTCTTGTGCTACATTGCCCTGCATTTGCCAGATAGAGAGGAGCTAGCACGGGCCGAGGCGCTTCCCGTCATCGAATGGGCGTCAAAACAATCTCATTTGACGCAGGACGAAACACTCGAAACACTCTTACACGAGGCCGGAAGTAAGCTAGAGCTCTTTCAATCTAGAGGTCCAAGAGGATACCATTGA 1977 51.95 MAEIKLILARPIQSADQITKAADEATNCKQECAELKSKTEKLATLLRQAARASSDLYERPATRIINETAQALDKALSLVLKCSGNGLMKRVFTIIPAAAFRKSCSQLENSIGDVSWLLRVSASAEDRGDEYLGLPPIAANEPILGLIWEQIAILSTGSPDDRADAAASLVSLAKDSERYGKRIIEEGGVGALLKLLKEGKVEGQENAANAIGLLGRDPENVEAMIQAGVCQVFAKILKEGPMKVQAVVAWAVSELVSSYPKCQDLFEQHYMIRSLVGHLAFETIQEHSKYNITVNKATSIHALVMASTPKSNNVYKAAEEDDRQPHSRILHPMGNRTPNQMHAVVTNTINMLSGGSAAAATATPQASSHGGEGHSLSSNGKHILPHHSPYLHHAHSGPSAKGRELEDPATKTKIKAMAAKALWQLAKGNLTVCRSITESRALLCFAVLLEKGEQNVRHNSAMALMEITAMAEHDPDLRRSAFKPTSPACRAVVEQLLKIIEKEDADLLIPCIKSTGHLARTFRATEKRMITPLVQLLDERETEISKEACIALTKFACSENFLHINHCEEIIAAGGAKHLVQLVYFGEHSVQNAAVTLLCYIALHLPDREELARAEALPVIEWASKQSHLTQDETLETLLHEAGSKLELFQSRGPRGYH 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71444173 71446512 + Hsped.04g15960.1 Hepe04g1596 568734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1596 658 Gene3D - 393 643 IPR011989 -
Hepe04g1596 658 SMART arm_5 517 557 IPR000225 GO:0005515(InterPro)
Hepe04g1596 658 SMART arm_5 429 469 IPR000225 GO:0005515(InterPro)
Hepe04g1596 658 SMART arm_5 563 603 IPR000225 GO:0005515(InterPro)
Hepe04g1596 658 SMART arm_5 175 216 IPR000225 GO:0005515(InterPro)
Hepe04g1596 658 SMART arm_5 217 257 IPR000225 GO:0005515(InterPro)
Hepe04g1596 658 MobiDBLite consensus disorder prediction 317 337 - -
Hepe04g1596 658 Pfam Armadillo/beta-catenin-like repeat 217 256 IPR000225 GO:0005515(InterPro)
Hepe04g1596 658 Pfam Armadillo/beta-catenin-like repeat 183 213 IPR000225 GO:0005515(InterPro)
Hepe04g1596 658 Gene3D - 3 120 IPR036537 GO:0007166(InterPro)
Hepe04g1596 658 MobiDBLite consensus disorder prediction 356 408 - -
Hepe04g1596 658 FunFam Armadillo repeat only 2 149 318 - -
Hepe04g1596 658 Coils Coil 18 55 - -
Hepe04g1596 658 PANTHER ARMADILLO REPEAT ONLY 4 3 655 - -
Hepe04g1596 658 Gene3D - 145 323 IPR011989 -
Hepe04g1596 658 MobiDBLite consensus disorder prediction 356 375 - -
Hepe04g1596 658 SUPERFAMILY ARM repeat 151 630 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1596 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1596 Hepe-Chr4:71444173 Hepe08g0276 Hepe-Chr8:2496954 1.25e-284 dispersed
Hepe04g1596 Hepe-Chr4:71444173 Hepe10g0042 Hepe-Chr10:365476 7.20e-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1117 . . . . . . . Bma15g00941 . . Cma03g00681 Cma07g00424 Car03g00628 Car07g00371 Sed14g1200 Cpe19g00863 Cpe10g00667 Bhi03g00862 Tan03g2088 Cmetu04g1901 . Hepe04g1596 . . Cla01g01984 Cam01g2077 Cec04g1736 Cco04g1802 Clacu01g2099 Cmu01g1974 Cre04g1650 . . Cone6ag1684 Cone9ag1606 Lsi01g00597 . . Cme08g00933 Blo05g00710 Blo06g00299 . . Bpe10g00158 Bpe06g00129 . . Sed01g0209 Cmo03g00706 Cmo07g00421 . . . . . . Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . . . . . . . . . Csa06g03331 Chy02g00569 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006048 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39