Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1597 ATGCCAATGGGGTTGTTCTACCATTTCCACCATTCTTCTCCCTTCTTCTCGAGCTTGATTGTGCTTCTTCTTCTCAAAGAGGTTTCCGGTGCTACATTCACGTTCGTTAACAAGTGCGATTTCACCGTCTGGCCGGGAATTCTCGCCAGTGCCGGCACCCCCAAACTGGAAACCACCGGTTTCGAGCTGGAACAGGGAAATTCTCGTTCTTTACGAGCTCCGACCGGCTGGTCCGGTCGGTTCTGGGGCAGGACCGGCTGCAATTTCGACGGCTCCGGCCGCGGCAGCTGCAACACCGCCGACTGCGGCTCCGGCGAGACAGAGTGCAACGGAGCCGGCGCCACGCCGCCGGCGACGTTAGCTGAATTCACACTCGGCTCTGGCTCGATGGATTTCTACGACGTCAGCCTTGTCGACGGATACAATTTGCCGATGATCGTTGAGGGAACCGGCGGGTCGGGCACGTGCGCGTCGACCGGCTGCATTACAGACCTGAACCAGCACTGTCCAGCGGAGCTGAAGGCGGAGGGCGGCGGCGCGTGCAAAAGCGCTTGTGAGGCATTTGCCACGCCGGAATACTGCTGCAGCGGCGCGTATAACTCGCCGGCGACTTGCCGACCGTCAATGTACTCGCAAATGTTCAAATCGGCGTGCCCCAAATCTTATAGTTACGCTTATGATGACGCCACTAGCACATTTACCTGTAATGGAGCTGATTACACCATCACATTTTGCCCTTCTACCCCAAGCGGGAAATCTTCGAGGGATTCGCCACCGGTGATACCGGGGCCACCGACGGAGCAGTCGGGAACAGAGCCGATGACTGAGTCGGGATCGGGATCGGAATCGGGATCGGGATCAGGTTCAATACAAGGAGCAGCTTTGAGTAGTTCATGGCTTGCAGAAATGGCCATAGGGGAATCTTCCATTGCTACAAAACCAAGCTTGGGATTTCAAACATTGTCAATTTTGATGTTCTATGCGGTTCTATCTCTGGTTCTCTCGTAG 1008 55.85 MPMGLFYHFHHSSPFFSSLIVLLLLKEVSGATFTFVNKCDFTVWPGILASAGTPKLETTGFELEQGNSRSLRAPTGWSGRFWGRTGCNFDGSGRGSCNTADCGSGETECNGAGATPPATLAEFTLGSGSMDFYDVSLVDGYNLPMIVEGTGGSGTCASTGCITDLNQHCPAELKAEGGGACKSACEAFATPEYCCSGAYNSPATCRPSMYSQMFKSACPKSYSYAYDDATSTFTCNGADYTITFCPSTPSGKSSRDSPPVIPGPPTEQSGTEPMTESGSGSESGSGSGSIQGAALSSSWLAEMAIGESSIATKPSLGFQTLSILMFYAVLSLVLS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71470404 71471783 + Hsped.04g15970.1 Hepe04g1597 568735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1597 335 CDD TLP-PA 32 245 - -
Hepe04g1597 335 Pfam Thaumatin family 37 246 IPR001938 -
Hepe04g1597 335 PANTHER OS03G0233200 PROTEIN 20 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Hepe04g1597 335 MobiDBLite consensus disorder prediction 268 291 - -
Hepe04g1597 335 SUPERFAMILY Osmotin, thaumatin-like protein 31 247 IPR037176 -
Hepe04g1597 335 SMART tha2 33 246 IPR001938 -
Hepe04g1597 335 FunFam THAUMATIN-LIKE PROTEIN 1 31 246 - -
Hepe04g1597 335 ProSitePatterns Thaumatin family signature. 93 109 IPR017949 -
Hepe04g1597 335 ProSiteProfiles Thaumatin family profile. 30 246 IPR001938 -
Hepe04g1597 335 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Hepe04g1597 335 PRINTS Pathogenesis-related protein signature 93 122 IPR001938 -
Hepe04g1597 335 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Hepe04g1597 335 PRINTS Pathogenesis-related protein signature 80 91 IPR001938 -
Hepe04g1597 335 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Hepe04g1597 335 MobiDBLite consensus disorder prediction 249 291 - -
Hepe04g1597 335 Gene3D Thaumatin 31 246 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1597 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1597 Hepe-Chr4:71470404 Hepe08g0279 Hepe-Chr8:2526979 4.32e-134 dispersed
Hepe07g0009 Hepe-Chr7:216301 Hepe04g1597 Hepe-Chr4:71470404 2.14e-92 transposed
Hepe01g1607 Hepe-Chr1:81348554 Hepe04g1597 Hepe-Chr4:71470404 1.96e-105 wgd
Hepe10g0160 Hepe-Chr10:1635964 Hepe04g1597 Hepe-Chr4:71470404 6.66e-106 wgd
Hepe04g1597 Hepe-Chr4:71470404 Hepe06g0921 Hepe-Chr6:56711387 4.50e-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116