Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1601 ATGGAGGAAGAAGCTTCTACATCGCCGTTGCCGGCGGCGTTTCTCGATTTTCTGAAGGAGAATGGTCTGAACCCTTCCATTTACGCTGCTACTGATTCTACCCCTCGTTATGTCAGGTTGAAGCCTGGTTATGAAGCTAATGTGGAGGAGATAGAGGCCGAGATCAATTGCAAGCTCGAGAAAGTCAGTTGGCTGCCTGGATTCTATTCTCTTCCGCCCGATGTTCTGATTGCTGGCTCCCATGCTTACAAGACAGGAAAGATATATGGAATAGATGCAGCATCCGGTGCTGCTGTTTCTGCTTTAGACATTTTACCAGGCAATCATGTCCTTGATCTTTGTGCGGCTCCGGGGGCCAAACTCTGCATGATCGTAGACCTTCTTGATGGTTTGGGTTCTGTAACTGGAGTAGATGTTTCACAGCATCGTTTAGCTGCTTGTAGAACAATGCTGCAAAAATATGCTCTTGGTGATATTTGCCGACTTTTTGTTGCTGATGGAGCAACATTTTCTCTCATTCCTGTGAATGTTACTTCAGAGTCTAGATTAGGTGAATCTACATTAGAAGATAGTGTTGACAGATTGAAGGAGTGGACATCTAGAAAATCTTGGAAGGAAAGGAAAAAAGCAGCCAAAGCAAAACAAAACGTTGCTGCAGGGTTAGTCCAGTGCCAGAGGTGTCAGGATCCAGAACTTATCTTTTATGGGCTAAAATCTGGCGTGGTTGGGTTCACTAAGAGTGAGATATACCGAAGTCCTTCAGAAAGTGAGATATTGAGCTGTGGGTACGATAGGGTTCTAGTGGATGCTGAGTGCACTCATGATGGCTCTATAAAGCATATACAGAAATTTGAAAGTTGGGGTTGGACATCTCTTCAGCGCCGAGTACTGGAAGCTGAGAGAACAGATAATTTGACTGTACTTCAGTTAAGACTCCTTACCAATGGTTTTAGGTTGCTAAAATCTGGGGGGATACTTGTCTACAGCACTTGCAGTCTTACAGTAGCACAAAATGAGGATGTTGTGGAACAGTTTCTGAAGGATAATGCTTCCGCAGAGTTGCAGGAGATAGAAGCTGCAAGAAATTGGCCATGCAAAGGTGGACGAATACCAAAGACCCTACGGTTTGATCCTTTGACATCACAGACAAGTGGGCTTTTTGTAGCAAAGTTCTTGAAGTTGGCTAAATAA 1191 44.25 MEEEASTSPLPAAFLDFLKENGLNPSIYAATDSTPRYVRLKPGYEANVEEIEAEINCKLEKVSWLPGFYSLPPDVLIAGSHAYKTGKIYGIDAASGAAVSALDILPGNHVLDLCAAPGAKLCMIVDLLDGLGSVTGVDVSQHRLAACRTMLQKYALGDICRLFVADGATFSLIPVNVTSESRLGESTLEDSVDRLKEWTSRKSWKERKKAAKAKQNVAAGLVQCQRCQDPELIFYGLKSGVVGFTKSEIYRSPSESEILSCGYDRVLVDAECTHDGSIKHIQKFESWGWTSLQRRVLEAERTDNLTVLQLRLLTNGFRLLKSGGILVYSTCSLTVAQNEDVVEQFLKDNASAELQEIEAARNWPCKGGRIPKTLRFDPLTSQTSGLFVAKFLKLAK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71486269 71489963 - Hsped.04g16010.1 Hepe04g1601 568739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1601 396 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 23 394 IPR001678 GO:0008168(InterPro)
Hepe04g1601 396 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 19 393 IPR029063 -
Hepe04g1601 396 CDD AdoMet_MTases 110 176 - -
Hepe04g1601 396 PRINTS RNA (C5-cytosine) methyltransferase signature 323 339 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe04g1601 396 PRINTS RNA (C5-cytosine) methyltransferase signature 376 393 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe04g1601 396 PRINTS RNA (C5-cytosine) methyltransferase signature 111 121 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe04g1601 396 Gene3D Vaccinia Virus protein VP39 10 393 IPR029063 -
Hepe04g1601 396 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 29 395 IPR023267 GO:0001510(PANTHER)|GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe04g1601 396 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 10 28 IPR023269 -
Hepe04g1601 396 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 284 303 IPR023269 -
Hepe04g1601 396 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 136 153 IPR023269 -
Hepe04g1601 396 Pfam 16S rRNA methyltransferase RsmB/F 261 391 IPR049560 -
Hepe04g1601 396 Pfam 16S rRNA methyltransferase RsmB/F 101 157 IPR049560 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1601 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1420 Hepe-Chr4:69897103 Hepe04g1601 Hepe-Chr4:71486269 1.70e-07 dispersed
Hepe04g1601 Hepe-Chr4:71486269 Hepe10g1898 Hepe-Chr10:55774578 2.06e-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1126 . . . Bda10g00189 . . . . . . Cma03g00678 . Car03g00626 . Sed05g0671 . . Bhi03g00848 Tan03g2092 Cmetu04g1543 . Hepe04g1601 . . . . . . . . . . . Cone6ag1689 Cone9ag1611 Lsi01g00592 . . Cme08g00941 . Blo06g00294 . . Bpe10g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03339 Chy02g00561 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014670 1 1 1 1 1 1 0 0 0 1 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 0 0 0 0 1 19