Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1608 ATGGCGCCTCCCAAAGTTGATGCATCGTATCTCAAGGAAATCGAGAAGGCCCGTCGAGACCTTCGCGCTCTAATCTCCAAGGAGAAATGCGCTCCTATTATGCTTCGTTTAGCGTGGCATGATGCTGGTACTTTTGACGCTAAGACGAAAACCGGAGGTCCCGATGGCTCCATCAGATTCATGGATGAATTGAACCATACTGCAAACAAGGGACTGAAAATTGCAGTTGATTTCTGTGAACCTGTGAAGGTTAGACATCCAAAAATCACATATGCAGATCTGTACCAGCTTGCTGGGGTTGTTGCTGTGGAGGTCACTGGGGGGCCATCTATTGACTTTGTCCCAGGAAGAAAGGACTCACATGTAGTTCCAAAAGAAGGGCGCCTTCCAGATGGCAACCAAGGTGCATCCCATTTAAGAGATGTCTTTTACAGGATGGGACTGAGTGACAAGGATATTGTGGCATTATCTGGAGGCCACACATTGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACAAAGGACCCTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGCTGAAAAAAGACTCTTGGACTGAGGAACAACTATTGAAGCTTCCTTCAGACAAGGCCTTGCTTACAGATCCTCGGTTTTCCGAATATGTGAAGGCGTATGCAAAGGATGAAGATAAGTTTTTCGAAGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTAGGATTCACTTCACCTTCCACAATTCTCAAGAGCAGAGCCTCCTTATGGGCAAATCAAATTCTGATAGCTGCAATCGTAGCAGTTGTGGCAGTACTGAGTTTCAAAAGAGCCATGTCGTCTGAGAGGGATGGCTTTCCAACTCTCTTCTGA 885 45.76 MAPPKVDASYLKEIEKARRDLRALISKEKCAPIMLRLAWHDAGTFDAKTKTGGPDGSIRFMDELNHTANKGLKIAVDFCEPVKVRHPKITYADLYQLAGVVAVEVTGGPSIDFVPGRKDSHVVPKEGRLPDGNQGASHLRDVFYRMGLSDKDIVALSGGHTLGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKKDSWTEEQLLKLPSDKALLTDPRFSEYVKAYAKDEDKFFEDYAASHKKLSELGFTSPSTILKSRASLWANQILIAAIVAVVAVLSFKRAMSSERDGFPTLF 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71538782 71542295 - Hsped.04g16080.1 Hepe04g1608 568746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1608 294 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 12 252 IPR044831 GO:0000302(PANTHER)|GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0009507(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Hepe04g1608 294 FunFam Cytosolic ascorbate peroxidase 17 134 - -
Hepe04g1608 294 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601(InterPro)
Hepe04g1608 294 Gene3D - 17 246 - -
Hepe04g1608 294 CDD ascorbate_peroxidase 4 250 - -
Hepe04g1608 294 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 Pfam Peroxidase 18 227 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 Coils Coil 11 31 - -
Hepe04g1608 294 SUPERFAMILY Heme-dependent peroxidases 14 251 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 FunFam L-ascorbate peroxidase, cytosolic 130 239 - -
Hepe04g1608 294 ProSiteProfiles Plant heme peroxidase family profile. 89 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 Gene3D Peroxidase, domain 2 130 239 - -
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 223 247 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g1608 294 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1608 K00434 - - csv:101220337 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2244 Hepe-Chr2:63839535 Hepe04g1608 Hepe-Chr4:71538782 6.44e-72 dispersed
Hepe04g1608 Hepe-Chr4:71538782 Hepe10g1144 Hepe-Chr10:45352442 1.04e-111 dispersed
Hepe02g0430 Hepe-Chr2:4140414 Hepe04g1608 Hepe-Chr4:71538782 1.06e-136 transposed
Hepe10g0250 Hepe-Chr10:2628450 Hepe04g1608 Hepe-Chr4:71538782 7.30e-39 transposed
Hepe10g0176 Hepe-Chr10:1784585 Hepe04g1608 Hepe-Chr4:71538782 4.25e-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63