Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1639 ATGAGTTCCTGTTTGTTTCAAGATTACAACTTGCTGTCGGGGCTCGCCACTGCAGAACAATCAACTCCCTCCTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACCGTTCCCGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCCGCCTTCATGGCCCTCTATGGCTTCGCTGCCGTGCTCGTCTGTTGGGTGTTGTGGGCACATAATATGGCATTCGGCGACCGATTGTTCTGGCTCGTCGGTAAGCCCGGCGTAGCGCTGTCTGAAAGGTACCTTCTTTCACAGTCTACACAAGGATGTTTTCCGATGGCTGACTACGTGTTTTTCCAGTTCGCTTTCGCCGCCATTACCGTCGTGTTGCTTGCCGGGTCCTTGCTGGGAAGGATGAACTTTTATGCGTGGATGCTTTTTGTTCCAATGTGGCTAACTCTTTGTTACACTGTTGGGGCTTTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGACTACGCAGGCGGCTATGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCACGACACTCCCGGGACAGGCAGAACTTCCCACCAAACAACATACTGCACATGGTAGGCGGCGCAGGGTTTCTTTGGATGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTTCAGCGGGTCGGATTACATCGCTAGCCATTTTGAACACACATATCTGCACCGCGACAAGTCTCTTGATCTGGGTTTCAATGGACATCATTGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTCTGCATCACTCCTGGTGCAGGGCTTGTGGACACGGTCGCAGCTGTGGTGATGGGCGTGCTCGCTGGTTTGGTGCCATGGTACACCATGATGGTGCTTCACAGGAGGCTGGCATTCCTTCAGTGTGTCGATGATACTTTGGGCGTCTTCCACACGCACGCAGTGGCTGGTTGCATGGGGGGACTCCTCACAGGTTTCTTTGCCAAACCCAGCCTTTTGAGAATGTTGTATCCAAATTCTCTATATGGTCCAGGCTTCCTGTACGCCATCGCTGATAGAAAGCTCAAAGATGGTCTCAAACAAATTGGCATCCAGTTCGCTGGAGCAGTGTTTATTACTCTTTGGAATGTCATTTTCACCAGCATTATCTGTTACCTGATTAGCCATATTGTTAACTTAAGGATGAAAGAAGAGGACCTGGAGATTGGTGACGATGCCGCTCATGGAGAAGAACCCTACGCGTTGTGGGGCGACGGAGAGAAAATGCCATCCTCATTTCGTCTTCCGCGCACTCCTAGGTTCCCTTCATTATGCAGGTGGGATTAG 1419 51.09 MSSCLFQDYNLLSGLATAEQSTPSWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHNMAFGDRLFWLVGKPGVALSERYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQNFPPNNILHMVGGAGFLWMGWTGFNGGAPFSAGRITSLAILNTHICTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTVAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGCMGGLLTGFFAKPSLLRMLYPNSLYGPGFLYAIADRKLKDGLKQIGIQFAGAVFITLWNVIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPRTPRFPSLCRWD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71733747 71735402 - Hsped.04g16390.1 Hepe04g1639 568777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1639 472 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe04g1639 472 NCBIfam ammonium transporter 30 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe04g1639 472 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Hepe04g1639 472 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Hepe04g1639 472 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Hepe04g1639 472 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005886(InterPro)
Hepe04g1639 472 PANTHER AMMONIUM TRANSPORTER MEP2 21 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Hepe04g1639 472 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe04g1639 472 Gene3D Ammonium transporter AmtB like domains 9 447 IPR029020 -
Hepe04g1639 472 SUPERFAMILY Ammonium transporter 25 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1639 Hepe-Chr4:71733747 Hepe10g0275 Hepe-Chr10:2886008 1.60e-192 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1639 K03320 - csv:101218977 907.516