Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1666 ATGGCGTTTTCCGATGAGAACAATCCCAACTTGATCAAACCCACTGGGTTTCTTCCAGGAGGAGGATTGGAGAAGAATGGTGGGAGGGCTTTTGGCCAGGAGATTAGTAGAGTTAATAATCGAAGAGTTCTTAATGCCATTAATCAGAATTCTGTGGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGTTCTCTCAGGAAAGCAAGAGATCTGTGAGAAGAAGCAGGCTGATCCATTTCATAGACCGATTACAAGAAAGTTTGCTGCTCAAATTTCGACTAGTCAACCGCTTCAGCATCCACAGGAAAATAATAAGCCTAACTCAATTCTTTCAAACTCAAATGCATTTGGACATTCCATATTTGTAGACGAGGATTACAAAACAGTAGAAAATGACCATCCAGTTCCCATGTTCTTGGAGAAATCAGAATCAGCATTGTCTCAGGAAGCAAGCCAGATGGAGGAGGTTGAAATGGAGGATATTGCAGAAGATGACGACGACGACGACCCGATAATCGACATTGATTCTGTCGATTCCGAGAACCCGCTTGCCGTTGTCGACTATATCAAAGATCTCTACGCACACTATAGAAAAATTGAGAATTCAAGCTGTGTTGCTCCAAATTACATGACAACACAAATTGACATTAATGAAAGGATGAGAGCTATACTAATTGACTGGCTTATAGAGGTTCATGACAAGTTTGATCTGATGGGAGAAACATTGTTTCTCACTGTGAATCTCATAGACAGATTTTTGTCACAAAAATCAGTTGTGAGAAAGAAGCTGCAGCTGGTTGGTTTGGTTTCTATGCTCTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAATAGAAGTTCTTGAAATGGAGACAGTGATCCTCAACTGTTTGCAGTTTAACATGTCAGTTCCCACGCCTTTTGTTTTCCTCCAAAGGTTCCTCAAAGCTGCTCAATCTGACAAAAAGCTTGAGCTAATGGCATTCTTCTTAGTCGAGCTATCCCTCGTGGAGTATGAAATGCTGAGATTCCCGCCCTCTCTGCTAGCGGCAGCGGCGACTTACACAGCTCATTGTACTCTCACCGGAGTTTCGGGGTGGAGCCGGACCAGCGAGTGGCATTCTAGCTACTCAGAAGATCAGCTCTTAGAATGCTCGAGACTGATGGTGGGGTTCCATCAGAAGGCGGCGACCGGGAAGCTGACCGGAGTTCATCGAAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1341 42.95 MAFSDENNPNLIKPTGFLPGGGLEKNGGRAFGQEISRVNNRRVLNAINQNSVVNQAYPCVVNKRVLSGKQEICEKKQADPFHRPITRKFAAQISTSQPLQHPQENNKPNSILSNSNAFGHSIFVDEDYKTVENDHPVPMFLEKSESALSQEASQMEEVEMEDIAEDDDDDDPIIDIDSVDSENPLAVVDYIKDLYAHYRKIENSSCVAPNYMTTQIDINERMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKSVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRIEVLEMETVILNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLVELSLVEYEMLRFPPSLLAAAATYTAHCTLTGVSGWSRTSEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71896627 71899253 - Hsped.04g16660.1 Hepe04g1666 568804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1666 446 SUPERFAMILY Cyclin-like 182 318 IPR036915 -
Hepe04g1666 446 FunFam G2/mitotic-specific cyclin-1 316 433 - -
Hepe04g1666 446 SUPERFAMILY Cyclin-like 320 438 IPR036915 -
Hepe04g1666 446 Pfam Cyclin, N-terminal domain 193 319 IPR006671 -
Hepe04g1666 446 FunFam G2/mitotic-specific cyclin 207 315 - -
Hepe04g1666 446 ProSitePatterns Cyclins signature. 223 254 IPR048258 -
Hepe04g1666 446 PANTHER CYCLINS 166 425 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe04g1666 446 SMART Cyclin_C_2 321 438 IPR004367 -
Hepe04g1666 446 SMART cyclin_7 228 312 IPR013763 -
Hepe04g1666 446 SMART cyclin_7 325 407 IPR013763 -
Hepe04g1666 446 Coils Coil 141 161 - -
Hepe04g1666 446 Gene3D - 207 319 - -
Hepe04g1666 446 PIRSF Cyclin_A_B_D_E 24 446 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe04g1666 446 Gene3D - 193 433 - -
Hepe04g1666 446 Pfam Cyclin, C-terminal domain 321 437 IPR004367 -
Hepe04g1666 446 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2338 Hepe-Chr1:87913705 Hepe04g1666 Hepe-Chr4:71896627 2.46e-154 dispersed
Hepe04g1666 Hepe-Chr4:71896627 Hepe08g0180 Hepe-Chr8:1558417 5.26e-68 dispersed
Hepe04g1666 Hepe-Chr4:71896627 Hepe01g2047 Hepe-Chr1:85134402 3.99e-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1666 K21777 - csv:101216622 758.059