Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1674 ATGAGGATTATTTGCATTCTAGTATTGATGCTTCTCTTCAATGGGAGTTCCTCAATTGGAGATAGCACAAATGTATCCACGAGACCTGATGTCGTCAACATTGGGGCTTTATTCTCTTTCCGTTCTATGATAGGTAGAATTGGAAAAATTGCCATAGAAGCTGCTGTCGAGGATGTAAATTCTGATCCATCCATTCTGGAGGGGACGAAGCTGAAGCTCACTTTACATGATACCAATTACAGTGGATTTTTGGGCATCATTGAGTCCTTGCGTTTCATGGAGACTAAGACTATGGCTATAATTGGCCCCCAAAACTCTGTAACTGCTCATGTAATATCTCATATTGCAAATGAGCTCCAAGTCCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTATATCAGATGGCTGCAGTAGCAGAAATAGTTGACTACTTTCAATGGAGAGAGGTGATTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTTCTGCATTGGGGGATCAACTTAATGAGAAAAGATGTAAGATCTCATTAAAAGTACCATTAAAGCCCGATGCAAGTCGAGGCGAGGTCACTGATGCACTTGTTAAGGTGGCGTTAACTGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTGGTGCTCAATGTGGCTCAATATCTTGGATTGACAGGACCCGGGTATGTGTGGATTGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTTCTGCTTCCATGGAAAATATTCAAGGACTTGTTGCTTTACGTCTTTATACACCAGATTCTGCACTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTGACTAATGGAAAGTCATCAAGTGGTCCGCTCGGATTGAGTACTTACGGATTATATGCTTATGATACAGTTTGGATGCTTGCTCATGCAATAAATGCATTTCTTAATGACGGGGGAAACCTTTCATTTTCAAATCTTCCAAAGTTAACTGGGACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCATCTTCAATGGTGGGAAAACACTACTTCACAACATTTTAGACGTCAATTTTACTGGAATAACAGGTCCAGTTGAGTTCACTCCAGACAAGGACTTAATTCGCCCTGCATTCGAAGTGATCAATATAATCGGAACGGGGGAAAGGAGAATTGGTTATTGGTCTAACTATTCTGGCTTGTCAATTGTGCCTCCTGAAACCCTTTACTCAAAACCACCTAATCGATCCAGTTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACACAGAAGCCTCGAGGGTGGGCATTTCCAAGCAGTGGAAGACACTTGAAAATTGGAGTTCCGAGACGAGTCAGTTATCAGGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTTAGTGGCTACTGCGTTGATGTCTTCACTGCAGCAATCACCATGTTGCCTTATGCAGTCCCATATAAGTTAATTCCTTTTGGAGATGGCCAGAGTAATCCAAGCGCAACCGAGCTTATTCGTCTAATCACAACCGGGGTCTTCGATGCAGCGATAGGTGACATTACAATTATCACAAACCGAACCAGGATGGCAGATTTTACACAACCATACATCGAGTCTGGCTTAGTAGTCGTTGCCCCAGTCAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCGAAGATGTGGTGTGTTACTGCTGTTTCTTTTCTCGTAGTAGGAGCAGTCGTTTGGATTTTGGAGCATAGGATAAATGATGATTTCCGTGGCCCTCCGAGGAGACAAGTTATTACTATGCTATGGTTCAGCTTTTCAACTCTATTCTTTTCTCATCGGGAAAACACAGTCAGTACCCTTGGTCGCCTCGTGCTGCTCATATGGTTATTTGTTGTTCTTATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTGCAACAACTTTCTTCTTCTGTTAAAGGAATTGAAACTTTGGTTTCAAACAATGATCCAATTGGCTACCAGCAGGGTTCATTCGCTCGAAACTACTTGATAGAGGAACTAGGCATTCACGAGTCGAGACTTGTTCCACTCATCTCAGCAGAACACTATGTTAAAGCCTTGAATGATGGCCCAGAGAAGAATGGTGTTGCCGCTATTATCGACGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCATTGCGAATATAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAACGCGACTCTCCTTTAGCAGTTGACATGTCCACAGCTATTCTAAGTCTCTCTGAAAATGGGGATCTTCAAAGGATCCATGATAAATGGTTAATGAAAAGTGCCTGCACATCACAAGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGGCTTTTTCTAATGTGTGGATTAGCCTGCGTGCTTGCTCTATCGATATACCTCTTTCAAACGGTGCGCCAATATAGCGAGCATTACTCTGAAGAACTCGGGTCTTCTGAGCAACTCTCTCGATCTGCGAGCCTGCATAGATTTCTTTCTTTTGCGAATGAAAAGGAAGATGTCTTCAAAAGTCAGTCCAAGCGAAGGCATATGCAAGATGCTTCAGTTAGAAGCGCGAATGAAGAAAATTCAGCAGGTAGTTCTAGAAAATTTGGCCATGGTGATGCTGATGGTATTGATGCATGA 2799 42.52 MRIICILVLMLLFNGSSSIGDSTNVSTRPDVVNIGALFSFRSMIGRIGKIAIEAAVEDVNSDPSILEGTKLKLTLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWREVIAIFVDDDHGRNGISALGDQLNEKRCKISLKVPLKPDASRGEVTDALVKVALTESRILVVHTYETTGMVVLNVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPSASMENIQGLVALRLYTPDSALKRNFVSRWTNLTNGKSSSGPLGLSTYGLYAYDTVWMLAHAINAFLNDGGNLSFSNLPKLTGTDVGTLNLNSMSIFNGGKTLLHNILDVNFTGITGPVEFTPDKDLIRPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRSSSNQKLYDVVWPGQATQKPRGWAFPSSGRHLKIGVPRRVSYQEFVSQVEGTDMFSGYCVDVFTAAITMLPYAVPYKLIPFGDGQSNPSATELIRLITTGVFDAAIGDITIITNRTRMADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTPKMWCVTAVSFLVVGAVVWILEHRINDDFRGPPRRQVITMLWFSFSTLFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSSVKGIETLVSNNDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPEKNGVAAIIDERAYVELFLSTHCEYSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILSLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLMCGLACVLALSIYLFQTVRQYSEHYSEELGSSEQLSRSASLHRFLSFANEKEDVFKSQSKRRHMQDASVRSANEENSAGSSRKFGHGDADGIDA 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71943103 71946423 + Hsped.04g16740.1 Hepe04g1674 568812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1674 932 SMART GluR_14 472 813 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe04g1674 932 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Hepe04g1674 932 SUPERFAMILY Periplasmic binding protein-like I 28 462 IPR028082 -
Hepe04g1674 932 Pfam Bacterial extracellular solute-binding proteins, family 3 528 591 IPR001638 -
Hepe04g1674 932 Gene3D - 463 581 - -
Hepe04g1674 932 Gene3D - 582 705 - -
Hepe04g1674 932 FunFam Glutamate receptor 147 303 - -
Hepe04g1674 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Hepe04g1674 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Hepe04g1674 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Hepe04g1674 932 FunFam Glutamate receptor 708 815 - -
Hepe04g1674 932 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Hepe04g1674 932 PIRSF IGluLR_plant 1 928 IPR017103 -
Hepe04g1674 932 Gene3D - 781 811 - -
Hepe04g1674 932 MobiDBLite consensus disorder prediction 892 932 - -
Hepe04g1674 932 Gene3D - 50 399 - -
Hepe04g1674 932 FunFam Glutamate receptor 582 712 - -
Hepe04g1674 932 Pfam Receptor family ligand binding region 50 409 IPR001828 -
Hepe04g1674 932 MobiDBLite consensus disorder prediction 892 907 - -
Hepe04g1674 932 FunFam Glutamate receptor 466 582 - -
Hepe04g1674 932 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe04g1674 932 CDD GluR_Plant 471 811 - -
Hepe04g1674 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 895 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Hepe04g1674 932 Gene3D - 732 780 - -
Hepe04g1674 932 Gene3D - 147 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0361 Hepe-Chr2:3381094 Hepe04g1674 Hepe-Chr4:71943103 0.0 dispersed
Hepe04g1674 Hepe-Chr4:71943103 Hepe08g0470 Hepe-Chr8:4123596 0.0 dispersed
Hepe04g1674 Hepe-Chr4:71943103 Hepe01g2354 Hepe-Chr1:88051313 0.0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1674 K05387 - csv:101213408 1676.37