Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1684 ATGTTTCAACAGCAGAGTGATCATAATTCAAGCTTTCTTCAAAACAACTCATTAGTTCGTGAGCAGCATATACCTTCTGATGCCAGCTTGATGGAAGCCACAAATGGAAGTAATGGTCCCAGCAACAACCCGAATTTGGCCTCAAAGTCGAGACTGCGATGGACACATGACCTTCACGAACGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCTAAAGGCGTCCTTAGAGTGATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTCGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGAGAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACAGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTAAGAATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGTTGCCTCTTCCTTTTCAGCTCCTGCATCTGGTGACAACTGCCCAGAAACTGATAAAAATGACCCGCCAACACCTGCCCCAACATCCGAATCTCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGACGATTCTTTCTCGTCTCATCACGAACCACTGACGCCAGATTCTGGTTGCTATAGCTCCCCAAATGAGAGCCCAAGGCCAGTGAAGAAGCAAAGGCAGTACAGGGATGGTGCACTTGCCAAATCAGAGATGATACTTGCACATCAAATACTGGAGTCGAGTTTAAACTCCACTCACAAGGAACCGCGCTCTGTTTTTCCAGCTAGGGAAAAGTTTGATCCTTCATCTGGAATATCGATAGGAGACGATGACCGATGA 975 45.85 MFQQQSDHNSSFLQNNSLVREQHIPSDASLMEATNGSNGPSNNPNLASKSRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKAEKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASSFSAPASGDNCPETDKNDPPTPAPTSESPRQEKASKERAQAKSVSIDDSFSSHHEPLTPDSGCYSSPNESPRPVKKQRQYRDGALAKSEMILAHQILESSLNSTHKEPRSVFPAREKFDPSSGISIGDDDR 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72012622 72015976 - Hsped.04g16840.1 Hepe04g1684 568822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1684 324 MobiDBLite consensus disorder prediction 109 131 - -
Hepe04g1684 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 22 261 IPR046955 GO:0003700(InterPro)
Hepe04g1684 324 MobiDBLite consensus disorder prediction 237 266 - -
Hepe04g1684 324 Pfam Myb-like DNA-binding domain 51 102 IPR001005 -
Hepe04g1684 324 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Hepe04g1684 324 MobiDBLite consensus disorder prediction 291 324 - -
Hepe04g1684 324 FunFam Myb family transcription factor 48 106 - -
Hepe04g1684 324 Coils Coil 138 158 - -
Hepe04g1684 324 MobiDBLite consensus disorder prediction 109 125 - -
Hepe04g1684 324 MobiDBLite consensus disorder prediction 190 275 - -
Hepe04g1684 324 Gene3D - 48 107 - -
Hepe04g1684 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Hepe04g1684 324 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Hepe04g1684 324 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1684 Hepe-Chr4:72012622 Hepe05g0591 Hepe-Chr5:8771178 3.62e-53 dispersed
Hepe04g1684 Hepe-Chr4:72012622 Hepe04g1685 Hepe-Chr4:72019637 3.72e-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55478 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1684 - - - 0.0