Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1685 ATGTTTCCAAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGCGGCCGTGCTTCTGCTTCTTCCGACCTCACTCACACCCACAGGGGAGATCCCTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGATGGACTGCCGATCTTCACGAGCGATTCATCGATGCTGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTGCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGTGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTTCCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCTGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTTATTGGAGGTGCGGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACTTGATCGTAAGAGCCTGAGAAGTTCCTCCATCGACCCCCTTGGTTTCTATGCTTCGCAATCACAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTTCCTTGCCAAAGGGCTGATTGTTCGACCGAAAGCTGCCTAACCTCAAACGAGAGTCCCGGAGGATTGACCATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCCAAGGAAAGAATACAAGATGCTAATATCATCCAAGTTAACCATCACAGCGTATCCGGGTGCGACATGTGGGGATGA 942 46.71 MFPRLVNPDGDIQIHGGRASASSDLTHTHRGDPCLVLTSDPKPRLRWTADLHERFIDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMCEASKDGAYLLESPSSNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGLDRKSLRSSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLTMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHSVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72019637 72024933 - Hsped.04g16850.1 Hepe04g1685 568823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1685 313 MobiDBLite consensus disorder prediction 13 34 - -
Hepe04g1685 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Hepe04g1685 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Hepe04g1685 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 291 IPR046955 GO:0003700(InterPro)
Hepe04g1685 313 FunFam Myb family transcription factor 41 99 - -
Hepe04g1685 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Hepe04g1685 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Hepe04g1685 313 Gene3D - 41 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1685 Hepe-Chr4:72019637 Hepe05g1761 Hepe-Chr5:67921590 1.01e-54 dispersed
Hepe04g1684 Hepe-Chr4:72012622 Hepe04g1685 Hepe-Chr4:72019637 3.72e-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55479 PF00249 Myb_DNA-binding 6.10E-06 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1685 - - - 0.0