Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1685 ATGTTTCCAAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGCGGCCGTGCTTCTGCTTCTTCCGACCTCACTCACACCCACAGGGGAGATCCCTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGATGGACTGCCGATCTTCACGAGCGATTCATCGATGCTGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTGCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGTGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTTCCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCTGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTTATTGGAGGTGCGGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACTTGATCGTAAGAGCCTGAGAAGTTCCTCCATCGACCCCCTTGGTTTCTATGCTTCGCAATCACAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTTCCTTGCCAAAGGGCTGATTGTTCGACCGAAAGCTGCCTAACCTCAAACGAGAGTCCCGGAGGATTGACCATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCCAAGGAAAGAATACAAGATGCTAATATCATCCAAGTTAACCATCACAGCGTATCCGGGTGCGACATGTGGGGATGA 942 46.71 MFPRLVNPDGDIQIHGGRASASSDLTHTHRGDPCLVLTSDPKPRLRWTADLHERFIDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMCEASKDGAYLLESPSSNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGLDRKSLRSSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLTMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHSVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72019637 72024933 - Hsped.04g16850.1 Hepe04g1685 568823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1685 313 MobiDBLite consensus disorder prediction 13 34 - -
Hepe04g1685 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Hepe04g1685 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Hepe04g1685 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 291 IPR046955 GO:0003700(InterPro)
Hepe04g1685 313 FunFam Myb family transcription factor 41 99 - -
Hepe04g1685 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Hepe04g1685 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Hepe04g1685 313 Gene3D - 41 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1685 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1685 Hepe-Chr4:72019637 Hepe05g1761 Hepe-Chr5:67921590 1.01e-54 dispersed
Hepe04g1684 Hepe-Chr4:72012622 Hepe04g1685 Hepe-Chr4:72019637 3.72e-24 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55479 PF00249 Myb_DNA-binding 6.10E-06 CL0123 Hepe TF