Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1711 ATGCAAGCAGCTCAGAATCGCCAGCCTTCATCTGTGATCCATGAGATGTATAATCAGTCTGTGCAAGAGATAGATCCTTTCTATTTATCCCATTTTCACGTATTGGAGAACAATGTCTCCCCTGCCACAAGCAGCCAGGGAAACAGTGTTAACTTTACTTCCTATAAGGATCAGTTCTTTACTCTGGAATCATTCCAGGCTACTGCTGATTTGAGTGCCTGTAATTCCCCTTCTGCTGTTAGTGTTCTGTCTTCCAGGAGCCCTTTCTCACCTCAAGGTTCTCAATCGTGTTCTTCGGATCAACATCATTCCTTTGATAACACATGCGGATCACCACTAAGTGGATGCTCGGTTACTGATGATGAGAACGATTTAAAGCATAAGCTGAAGGAACTAGAAATTTCTTTACTGGGGCCTGAATCTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGCCCCTCGGAATGCTTCAGTGGCAAGGGGGAACTGGAATCAAGTGGTTGAAATGATTCCTAGACTTAATCTTCGGGACACGCTTATCCATTGTGCCCAAGCAATTCATGAGGAGGATCTAAATGTGGCAACATTACTTATGGATGTCTTAGGGCAGATGGTTTCGGTCTCTGGTGAGCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCGAGGTTGGAACGATCTGGGAGTGCAATATACAAGTCTCTAAAGTGCGAAGAGCCGACAAGCTCTGAACTAATGTCTTATATGTCTAGTCTATTCCAGATCTGCCCATACTATAAATTTGCTTATACTTCTGCAAATGCTGTCATTTGGGAGGCCATGGTCAATGAACCCATAATCCACATTATTGATTTTCAAATCGCACAGGGTAGTCAGTATATACCTCTCATCCAGGATCTTGCCAATCGGCCCAGTGGACCCCCAGTTCTTCTTAGCATTACAGGTGTGGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTTGGACAGAAGCTATCTCAACTGGCTCAATCTAAAGGAATTCCCTTCCAATTTCATGCTGCTGCAATGTCTGGTTGCGAGGTCGAACACAATAATCTTAGAATACGACCAGGAGAAGCGTTGGCAGTAAATTTTCCCTACGCCTTGCATCACATGCCAGATGAGAGTGTGACCACACAGAACCATCGAGACCGGCTTCTAAGGCTGGTTAAAAGTCTGTCACCGAAAGTAGTAACAATCGTTGAGCAGGAATCCAACACCAACACATCCCCATTCCTCTTACGTTTTATAGAGACGCTAGATTATTATACCGCTATGTTCGAATCAATAGACGTAGCTCGTTCGAGAGACGACAAGCAGCGAATCAGGACAGAGCAGAACTGCGTGGCCAGAGACATAGTGAACATGGTAGCTTGTGAAGGGTTCGAACGGGTAGAACGTCACGAACTCCTCGGCAAGTGGAGGATGAGAATGAAAATGGCTGGTTTTACACCATGTGGAATGAGCTCCTTTGTAACTGGAACTGTCAAGAATTTGTTGAGGGATTTCAACGAGAACTACAGACTCCAAGAAGAGAATGGAGCTCTCTACCTTGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGATGA 1650 45.64 MQAAQNRQPSSVIHEMYNQSVQEIDPFYLSHFHVLENNVSPATSSQGNSVNFTSYKDQFFTLESFQATADLSACNSPSAVSVLSSRSPFSPQGSQSCSSDQHHSFDNTCGSPLSGCSVTDDENDLKHKLKELEISLLGPESDIVDSCYCSFRGGAPRNASVARGNWNQVVEMIPRLNLRDTLIHCAQAIHEEDLNVATLLMDVLGQMVSVSGEPAQRLGAYLLEGLRARLERSGSAIYKSLKCEEPTSSELMSYMSSLFQICPYYKFAYTSANAVIWEAMVNEPIIHIIDFQIAQGSQYIPLIQDLANRPSGPPVLLSITGVDDSQSAHARGGGLQIVGQKLSQLAQSKGIPFQFHAAAMSGCEVEHNNLRIRPGEALAVNFPYALHHMPDESVTTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRIRTEQNCVARDIVNMVACEGFERVERHELLGKWRMRMKMAGFTPCGMSSFVTGTVKNLLRDFNENYRLQEENGALYLGWKNRAMATSSAWR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72209398 72212624 + Hsped.04g17110.1 Hepe04g1711 568849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1711 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Hepe04g1711 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 140 548 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe04g1711 549 Pfam GRAS domain family 178 549 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1711 Hepe-Chr4:72209398 Hepe06g0540 Hepe-Chr6:30762455 6.50e-179 dispersed
Hepe04g1711 Hepe-Chr4:72209398 Hepe08g0397 Hepe-Chr8:3565298 1.15e-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55481 PF03514 GRAS 5.90E-125 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1711 K27748 - csv:101207883 953.74