Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1728 ATGGCGACCTCATGTTTCGGTTCACTTTGCATTCGGAAATCAAAGAGCAAGCCCTTATCAACCCCTTCTTCATTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCATGGTCCATGATCCTAGAGTCCGAAAATGTGGATACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTTTCTCAGCTCTTCATCGGTAACAAATTCGCCTCCGGTGCTCACAGTCGGATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTAAAGATGGTGAGAATTCCAAACCAAAAGGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTATTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATACTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGACCTCAAATCAAATAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCAGATTTCGGAACCTCATGCCTGGAAACACAGTGCAGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTACACTCGCAAAGTTGATGTCTACAGCTTCGGGATTGTGCTGTGGGAGCTCACCACGGCTCTGCTTCCCTTTCAAGGGATGACCCCCGTGCAGGCAGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCATTGCCGGCGAGTTGTCAGCCTGCGTTAGCACACATGATAAAGCGGTGTTGGGCGGCGAATCCATCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCGTTGGAGAAATACGACGAGTGTGTGAAAGAAGGTCTTCCACTTGCACACCATAGAAGATTGGTAAACCGAAACGCCATTATTGAACGCTTGAAAGCTTGCGCCTCAACGAGCTCTTCAATACCTGTACATGCCTGA 1122 46.35 MATSCFGSLCIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVDTWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHMIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72315749 72317191 - Hsped.04g17280.1 Hepe04g1728 568866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1728 373 CDD STKc_MAP3K-like 83 327 - -
Hepe04g1728 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 PANTHER SERINE-THREONINE PROTEIN KINASE 55 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Hepe04g1728 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Hepe04g1728 373 Pfam Protein tyrosine and serine/threonine kinase 79 329 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 SUPERFAMILY Protein kinase-like (PK-like) 53 327 IPR011009 -
Hepe04g1728 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Hepe04g1728 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
Hepe04g1728 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1728 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1728 Hepe-Chr4:72315749 Hepe07g2231 Hepe-Chr7:66746012 1.18e-110 dispersed
Hepe04g1728 Hepe-Chr4:72315749 Hepe07g2061 Hepe-Chr7:64867703 3.96e-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72763 PF07714 PK_Tyr_Ser-Thr 7.90E-68 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1728 - - - 0.0