Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1740 ATGATGAATTTTGGAGATCAAAACAACAATAATGGGTTGTGTTCTATGATGATGATGATGCCTTTAATGTCCTCTCACCACCACCACCACCATCAAGGACCTGATTCATCTACTCCATTTCTTCCTCTTCCTCTTCCTCCTAATTACAACAACAATAATACTACTACTACTTCTTCTAACCCTATTTGTTACTTCATGGACCAAAACAACAACGATGACCCTAATAATAATGCAAATTCTTCTTCTGCTTCTTCTTCTCAAGTTAAGGCCAAAATCATGGCTCATCCTCACTACCACCGCCTCCTTGCTGCCTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGAAGCGGTGGCGAGGCTTGAAGAAGCGTGTGCATCTGCAGCAACAATGAGTGGCGGTGGTACGGGGTGTATTGGTGAAGATCCGGCGCTTGACCAGTTCATGGAAGCTTATTGTGAGATGCTCACCAAATATGAACAAGAACTTTCTAAACCCTTTAGGGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCACTCTCTATATCCTCCTCCCACGCCGGCGAGGCATTTGATAGGAATGGATCATCTGAAGAGGAAGTTGATATTAATGGCCATGCCATCGACCCCCAAGCCGAAGACCGTGAACTGAAAGGTCAGCTCCTCCGCAAATACAGCGGGTACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAGGCCAGACAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGATTAGATCAAAAGCAAATCAACAATTGGTTCATCAACCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCACATCCACAGTATTACATGGACACAGTCTTGGGCAATCCTTTTCCTTTGGATATCTCTCCCACTCTACTCTAA 1017 44.54 MMNFGDQNNNNGLCSMMMMMPLMSSHHHHHHQGPDSSTPFLPLPLPPNYNNNNTTTTSSNPICYFMDQNNNDDPNNNANSSSASSSQVKAKIMAHPHYHRLLAAYVNCRKVGAPPEAVARLEEACASAATMSGGGTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAGEAFDRNGSSEEEVDINGHAIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72434067 72437758 + Hsped.04g17400.1 Hepe04g1740 568878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1740 338 SUPERFAMILY Homeodomain-like 242 316 IPR009057 -
Hepe04g1740 338 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g1740 338 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Hepe04g1740 338 SMART KNOX1_2 86 130 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe04g1740 338 FunFam Homeobox protein knotted-1-like 2 245 307 - -
Hepe04g1740 338 MobiDBLite consensus disorder prediction 47 88 - -
Hepe04g1740 338 MobiDBLite consensus disorder prediction 25 88 - -
Hepe04g1740 338 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 310 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe04g1740 338 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Hepe04g1740 338 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Hepe04g1740 338 Pfam KNOX2 domain 138 184 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe04g1740 338 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe04g1740 338 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Hepe04g1740 338 SMART KNOX2_2 135 186 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe04g1740 338 Pfam KNOX1 domain 88 126 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe04g1740 338 Gene3D - 245 307 - -
Hepe04g1740 338 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Hepe04g1740 338 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1860 Hepe-Chr1:83537644 Hepe04g1740 Hepe-Chr4:72434067 5.77e-92 dispersed
Hepe01g1989 Hepe-Chr1:84698643 Hepe04g1740 Hepe-Chr4:72434067 7.17e-34 dispersed
Hepe04g1740 Hepe-Chr4:72434067 Hepe08g1369 Hepe-Chr8:16039618 2.61e-78 dispersed
Hepe02g0249 Hepe-Chr2:2487268 Hepe04g1740 Hepe-Chr4:72434067 2.98e-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55483 PF03791 KNOX2 5.20E-20 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1740 - - - 0.0