Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1747 ATGGACAAAGGATGGGGTCTTACCCTTCGTGATTCTGATCATCACTCAATTCGCTTCTTCTCACCACCGCCGCCGCCGCCCCCCACTCTCAATTCCTTTCACAGATCAACAATGTTTCAACGTATTGAATTTCCATCCAAACTTCCCCGGACTGACGACAACGCCTCCGACGATAATCGCTTGCTCATCAACGAGCTCGACTTTTTTTCCGACGTCAAAACGGAGGATCAACAATCTAAACCTTCCATTAATCTTATCCACAAACACGACAACAATTCTGCTACTGCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACCGGAAGCGATCAATCCACGGTGGATGATGGAATTTCACCGGATGCTGAAGATAAACGACCCACAAACGAGCAGCTAGCGGCGCTTCAAGTGGAGCTCCAGCGTATGAACGTTGAGAATCAAAAGCTCAGGGAGATGTTAAGTCATGTGAGCAACAACTATAGTACCTTACAAATGCATCTATTGACCTTAATGCAACAACAACAACAAAATCAAGCATCCCAACCCGCTCATGATCAACCACAGATTGGGGAGAAGAAATCAACAGAAAAAGCTGAAATTGGAAGGGTGGGGGTACCAATACAGAGGCAATTTATGGATCTAGGACCAAGTGGGAACACAGCTGAAACCGATGAATTATTATCTCATTCATCATCCGATGAAAGAACTCGTTCTGGGTCTCCATTATTGAACAACAACAACAATGAAACCGCGTCCAAAATCGCTCCTTCCGATCACGAGATTAATAAGAACAAAAGATCCATCCCCAGAGAAGAAAGCCCAGAATCAGAATCTCAATCTCAGGGTTGGGGTCCTAATAAAGCCCCTCGATTATTGAACAACTCTTCTTCTTCTTCTAAACCACCACTCGATCAGCAATCCACCGAAGCCACCATGAGAAAAGCTCGTGTCTCAGTCCGTGCCAGATCAGAAGCTCCCATGATTTCTGATGGCTGTCAATGGCGAAAATATGGCCAAAAAATGGCCAAAGGAAACCCATGTCCACGGGCCTATTATCGCTGCACAATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGATGTGCAGAAGACAGGAGTATATTGATAACAACTTACGAAGGCAACCACAACCACCCACTTCCGCCGACTGCCATGGCGATGGCGTCCACCACCACCGCGGCGGCTAGCATGTTGCTATCAGGGTCCATGTCTAGTGCGGACCATAGTCTAATGAACCCAAATTTATTGGCTAGAGCCATACTTCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCCGCTCCATTTCCAACCATCACATTAGACCTCACGCACACCCAAAACCCATTGCAGTTCCAAAGACCCGGGACAGTGGGGCCGTTCCACGTGCCGTTCGCCGGTGGACAACCACCGTCCTCTGCCGCCGCCGCCCAATTGCCGCAGGTTTTGGGCCAAGCGTTGTACAACCAGTCCAAATTCTCTGGGCTACAGCTGTCTCATGAGATGGGGCCCAATTCCTCCAATTTGGGGGGTCACCACCAGGCGGCAGCCCAGCCTGGTGGGGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATCACCGCCGATCCCAACTTCACTGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCCCATTCGAATAATAATAACACCAACACCAATACTTCCACAACAAACAACAACGGAAGCAGCAACAGCAAAATTAGCAGTTTCCCTGGAAATTAA 1797 48.97 MDKGWGLTLRDSDHHSIRFFSPPPPPPPTLNSFHRSTMFQRIEFPSKLPRTDDNASDDNRLLINELDFFSDVKTEDQQSKPSINLIHKHDNNSATAFNLVNTGLHLLTANTGSDQSTVDDGISPDAEDKRPTNEQLAALQVELQRMNVENQKLREMLSHVSNNYSTLQMHLLTLMQQQQQNQASQPAHDQPQIGEKKSTEKAEIGRVGVPIQRQFMDLGPSGNTAETDELLSHSSSDERTRSGSPLLNNNNNETASKIAPSDHEINKNKRSIPREESPESESQSQGWGPNKAPRLLNNSSSSSKPPLDQQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPTAMAMASTTTAAASMLLSGSMSSADHSLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTQNPLQFQRPGTVGPFHVPFAGGQPPSSAAAAQLPQVLGQALYNQSKFSGLQLSHEMGPNSSNLGGHHQAAAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNNTNTNTSTTNNNGSSNSKISSFPGN 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72500171 72502410 + Hsped.04g17470.1 Hepe04g1747 568885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1747 598 MobiDBLite consensus disorder prediction 112 131 - -
Hepe04g1747 598 Pfam WRKY DNA -binding domain 334 391 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1747 598 MobiDBLite consensus disorder prediction 237 259 - -
Hepe04g1747 598 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 118 572 IPR044810 GO:0003700(InterPro)
Hepe04g1747 598 MobiDBLite consensus disorder prediction 567 598 - -
Hepe04g1747 598 FunFam probable WRKY transcription factor 31 317 394 - -
Hepe04g1747 598 ProSiteProfiles WRKY domain profile. 327 393 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1747 598 Coils Coil 136 163 - -
Hepe04g1747 598 MobiDBLite consensus disorder prediction 177 316 - -
Hepe04g1747 598 MobiDBLite consensus disorder prediction 510 525 - -
Hepe04g1747 598 SMART WRKY_cls 332 392 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1747 598 MobiDBLite consensus disorder prediction 510 532 - -
Hepe04g1747 598 SUPERFAMILY WRKY DNA-binding domain 325 393 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1747 598 Gene3D WRKY domain 317 394 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1747 598 MobiDBLite consensus disorder prediction 260 277 - -
Hepe04g1747 598 MobiDBLite consensus disorder prediction 278 316 - -
Hepe04g1747 598 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1747 Hepe-Chr4:72500171 Hepe09g0135 Hepe-Chr9:1069494 1.21e-51 dispersed
Hepe02g0232 Hepe-Chr2:2368024 Hepe04g1747 Hepe-Chr4:72500171 1.02e-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55484 PF03106 WRKY 3.40E-24 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1747 - - - 0.0