Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1757 ATGTCAGTTTTCATTCCTATGACTCTTATTTCCTTTCATGTTCTCTGTAATTCATGTGTGTTATATGATTCTTTGCAGGTTATATTGGACAATGGATTGTTGAAGGTGACGATATCAAACCCCCAAGGATATGTAAGTGGCATCAAGTATGGAGGCATGGACAATCTGTTAGATGCAAAATCAAGCGAATCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTTAAAGGATCTGAGTTTAATGTCATCAACACCAGTGATGACACGATCGAGATATCATTCAGGAAGGTTTTCAACCCATCGACTCGAGGCAACGAACTTCCACTTGGTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTACGCAATCTACGAGCACCCGTCAGAATGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAATTGCGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCAGCCAGGCAGAGGTGAACAACTAATTGTACCCGAGTCAGTTCTGCTTGTAAATCCCATTAATCCCGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCAGTGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCAAGCCCAAACAACATAGGTTTTTGGGTAGTTTTTCCAAGCCATGAGTTCCGAAATGGCGGTCCTACAAAGCAAAATCTGACAGTCCATACCGGTCCTACTTGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGACATACTAACACATATTAAGGAGGGAGAGACATGGAGAAAGGTCTTTGGTCCTTTTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAAGCACACAATTTATGGATGGATGCAAAAGAACAGAGAATGCTAGAGGAAACAGCATGGCCCTACAATTTTGTCTCTTCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATATCAGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATTCCTGCTAGAGATGCACGTATTGGTTTATCCGCTGCTCGAGAAGAAGGTGCCTGGCAAACAGAGAGCAAGGAGTATCAATTTTGGGTACAAACAGATTCCAATGGATATTTCACTATCAGTAACATTATTCCTGGAATCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACAGTATCTGCAGGATCTCAAACCCATCTTGGCATTCTGACCTACAATCCCCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTTTCCTGACCGTACAGCTAATAGCTTCTATGTTCCTGATGTGAATCCGATGTATGCCAATAAGTTATTTCTTCACAGCCCTGAAAAGTTCAGGCAGTATGGTTTATGGGAAAGATACAGTGATTTACATCCCATAAATGACCAAGTTTTCATTGTGGGTATCAATGATCCGAAGAAAGACTGGTTCTTTGCTCAAGTTTGCAGACGAGGGGAAGATGGCGAATACGTTGCGACAACATGGACTATTAAGTTCAACACGACATCATTAACCAATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGAACTTGAAGATTAATGTCAACACAATGGGGTCAGAGTCTCTGATTTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAAATCATGGACTTTATCGGCTTTATAGTATCGATATTCCATCTTCGATGCTTGTTAAGGGAGATAACTCCATATTTCTCACGCAGGCAAGAGGTGGAGATGCACTCTGTGGAATCTTATACGATTATTTAAGACTGGAAGCTCCTGATACTTCATGA 1941 41.68 MSVFIPMTLISFHVLCNSCVLYDSLQVILDNGLLKVTISNPQGYVSGIKYGGMDNLLDAKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRKVFNPSTRGNELPLGVDIRYIMRTGIPGFYCYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLQPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSVDNKDGGVHGWISSSPNNIGFWVVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPFLVYLNSTSDVSEAHNLWMDAKEQRMLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPIPARDARIGLSAAREEGAWQTESKEYQFWVQTDSNGYFTISNIIPGIYGLHGWVPGFIGDYLHKSLVTVSAGSQTHLGILTYNPLRDGPTLWEIGFPDRTANSFYVPDVNPMYANKLFLHSPEKFRQYGLWERYSDLHPINDQVFIVGINDPKKDWFFAQVCRRGEDGEYVATTWTIKFNTTSLTNGTYRLRLAIASATRSNLKINVNTMGSESLIFQLMNLGMDNTVCRHGNHGLYRLYSIDIPSSMLVKGDNSIFLTQARGGDALCGILYDYLRLEAPDTS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72569219 72572759 + Hsped.04g17570.1 Hepe04g1757 568895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1757 646 CDD RGL4_M 344 441 IPR029413 -
Hepe04g1757 646 Pfam Rhamnogalacturonate lyase family 26 212 IPR010325 -
Hepe04g1757 646 Gene3D - 20 318 IPR014718 GO:0030246(InterPro)
Hepe04g1757 646 Pfam Polysaccharide lyase family 4, domain III 453 640 IPR029411 -
Hepe04g1757 646 SUPERFAMILY Galactose-binding domain-like 450 641 IPR008979 -
Hepe04g1757 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 23 644 IPR051850 -
Hepe04g1757 646 CDD RGL4_N 23 311 - -
Hepe04g1757 646 Pfam Polysaccharide lyase family 4, domain II 375 439 IPR029413 -
Hepe04g1757 646 Gene3D - 451 641 - -
Hepe04g1757 646 SUPERFAMILY Starch-binding domain-like 339 442 IPR013784 GO:0030246(InterPro)
Hepe04g1757 646 SUPERFAMILY Galactose mutarotase-like 28 306 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Hepe04g1757 646 Gene3D - 341 443 - -
Hepe04g1757 646 CDD RGL4_C 455 641 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1385 Hepe-Chr4:69514034 Hepe04g1757 Hepe-Chr4:72569219 1.68e-210 dispersed
Hepe04g1757 Hepe-Chr4:72569219 Hepe07g0578 Hepe-Chr7:6237066 5.41e-221 dispersed
Hepe04g1757 Hepe-Chr4:72569219 Hepe10g0445 Hepe-Chr10:5032406 9.26e-240 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1757 K18195 - csv:101220336 1195.65