Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1768 ATGGCTTGCTCAAACTTGACAATGTGGGTATCCCCAAAACCGTCTCCATCCGATGCCTCCGCTCTTTCTTCTCGGCCTTTTAACCATCTTCAACTTCCTTCGCAAAGCTCTGCCACGCGATCGTCTTCTGTCACTCCGATTCAGTGCGGTCTCCGTGAGCTCCGAGAACGAATCGATTCAGTGAAGAACACCCAGAAGATCACTGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTGCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTTTCGGAATCTCTAGTTGAAGTTCTTTACAACATCAACGAGCAGCTCCAAACCGAAGATGTAGATACTCCTCTCACAAAAGTCCGACCAGTCAAGAAGGTTGCTTTGTTAGTTGTTACAGGGGATCGAGGTCTCTGCGGCAGTTTCAATAACATGATCATCAAAAAAGCAGAATCAAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAGGGGAATACGTATTTCCTTCGCCGGCCTTACATTCCAGTAGATAGATTTATTGAGGGCGGTTCACTTCCCACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTGTAAGCGAAGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTGGTTAAATCCGACCCTGTGATTCACACTTTGCTTCCATTGTCGCCAAAAGGAGAGATTTGTGATATAAAGGGTGTTTGTGTCGATGCAGCAGAGGATGAATTCTTCAGATTGACGACAAAGGAAGGAAAATTGACCGTAGAGAGAGATGCTGTGAGGACAAAAACGTCAGATTTCTCACCAATTTTGCAGTTTGAGCAGGACCCAGTTCAGATGCTTGACGCTTTATTGCCTCTATATTTGAACAGTCAAGTTTTGAGGTCATTGCAGGAATCATTAGCTAGTGAACTTGCGGCTAGAATGAGTGCCATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGACGCTGTCTATTGTTTACAACAGACAGCGTCAAGCCAAAATCACTGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTGACTTGA 1116 45.16 MACSNLTMWVSPKPSPSDASALSSRPFNHLQLPSQSSATRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDVDTPLTKVRPVKKVALLVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNTYFLRRPYIPVDRFIEGGSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDIKGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQMLDALLPLYLNSQVLRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72617337 72618873 - Hsped.04g17680.1 Hepe04g1768 568906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1768 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Hepe04g1768 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 116 - -
Hepe04g1768 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Hepe04g1768 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 FunFam ATP synthase gamma chain, chloroplastic 118 241 - -
Hepe04g1768 371 Coils Coil 51 71 - -
Hepe04g1768 371 FunFam ATP synthase gamma chain, chloroplastic 267 370 - -
Hepe04g1768 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 MobiDBLite consensus disorder prediction 1 24 - -
Hepe04g1768 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Hepe04g1768 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 FunFam ATP synthase gamma chain, chloroplastic 49 116 - -
Hepe04g1768 371 NCBIfam ATP synthase F1 subunit gamma 50 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe04g1768 371 Gene3D - 117 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1768 Hepe-Chr4:72617337 Hepe07g2467 Hepe-Chr7:68978243 3.59e-15 dispersed
Hepe05g0578 Hepe-Chr5:8209307 Hepe04g1768 Hepe-Chr4:72617337 7.24e-129 transposed
Hepe04g1768 Hepe-Chr4:72617337 Hepe07g2036 Hepe-Chr7:64556874 2.18e-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1768 K02115 - csv:101218747 659.833