Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1780 ATGATCTCTTCACTCAGACTCGCATCTTCCAATTTCACTTCATCTCAACTTTTCAATCATAAATCTCCAATTCCGAGGTCGGATCTTTCATATCAGTCCTCAGATCGCACTGCATTTAATCACGTGGGTCGATCTCTTTCTACCAACAAACCACTTCACATCTCGTCTATTGAAAATCTTTCTCTGCCCACAGAAACGAAATCATATGAGCGTTCGACAACATGCAGAGCCTACGAGGCCGAATCGCGGCCTCATCAAATCAACATTGAGCTTCCCGATGAACAGATGGCTCAGAAACTCAAAATTGGACTCTATTTCGCAACTTGGTGGGCTCTGAATGTAGTCTTCAATATCTACAATAAAAAAGTTCTGAATGCGTTTCCTTATCCATGGCTCACCTCCACTCTCTCCCTCGCCGCTGGATCGCTCATCATGCTCGTTTCTTGGGCTACCAGAATTGTCGACGCTCCCAAAACCGATTTCGATTTCTGGATATCCCTTTTGCCGGTTGCAGTGGCACATTCAATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTTGCTGTGTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTCAGTGTGTTGGTGTCAAGGTTTCTGTTGGGTGAGATGTTTTCATTGCCTGTTTACTTATCTCTTATCCCAATCATCGGAGGCTGCGCTCTTTCCGCCGTTACTGAGCTCAATTTCAACATGATTGGTTTCATGGGAGCGATGATATCGAATTTGGCATTTGTGTTTAGAAACATATTCTCAAAGAAAGGGATGAAGGGAAAGTCAGTGAGTGGGATGAATTACTATGCTTGCCTCTCATTGTTGTCTCTGCTCATTCTTACTCCTTTCGCCATTGCTGTGGAGGGACCCAAGTTGTGGGCTGAAGGTTTCCAAACGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGTTAGGAGCTCAAAGTATGTTGTATCACTTGTACAATCAAGTGTCATACATGTCGCTTGATCAGATATCTCCATTGACATTCAGCGTAGGAAACACAATGAAGAGAATATTCGTAATAGTGTCGTCCATTATCATCTTCCACACTCCTCTCCGACCAATCAACGCCGTTGGAGCTGCCATTGCAATCCTTGGAACCTTCCTCTACTCGCAGGCCAAGCTGTGA 1182 44.84 MISSLRLASSNFTSSQLFNHKSPIPRSDLSYQSSDRTAFNHVGRSLSTNKPLHISSIENLSLPTETKSYERSTTCRAYEAESRPHQINIELPDEQMAQKLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLVSWATRIVDAPKTDFDFWISLLPVAVAHSIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFSLPVYLSLIPIIGGCALSAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQTALSQIGPNFIWWLGAQSMLYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPLRPINAVGAAIAILGTFLYSQAKL 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72701020 72702775 - Hsped.04g17800.1 Hepe04g1780 568918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1780 393 Pfam Triose-phosphate Transporter family 100 389 IPR004853 -
Hepe04g1780 393 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 100 392 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Hepe04g1780 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 142 235 - -
Hepe04g1780 393 PANTHER SOLUTE CARRIER FAMILY 35 97 392 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Hepe04g1780 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 286 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1780 Hepe-Chr4:72701020 Hepe05g1847 Hepe-Chr5:68785154 1.18e-103 dispersed
Hepe04g1877 Hepe-Chr4:73714964 Hepe04g1780 Hepe-Chr4:72701020 5.53e-71 transposed
Hepe10g1791 Hepe-Chr10:54663444 Hepe04g1780 Hepe-Chr4:72701020 3.47e-77 transposed
Hepe01g1296 Hepe-Chr1:78162253 Hepe04g1780 Hepe-Chr4:72701020 3.85e-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1780 K15283 - csv:101216621 629.402