Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1781 ATGTTCGATCCAGAGATGTTCGAATCACACCATCATATGCTTGAGGTGGCGTTCAACACATCAGAAAACGAGATGGAAAATGATTTTGAGATGAAAGGAGGCGCAGAAATCTTGGAGGATGGTGCTTGTGGGAGTGACCCACTACAACAACGCTCTAAGAAGAAACGTTACAATCGCCATACACAGCACCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCTCACCCAGATGACAAGCAGAGAATGGAGTTAAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAAAACAAGCGCACCCAAATGAAGGCTCAACAAGAAAGACATGAAAATGCGATTTTGAAGGCTGAAAATGAAAAGCTTCGAGCTGAGAATATTAGGTACCGAGAAGCATTTTCGCATTCGAGTTGCCCCAACTGCGGATCCTCCACTACTCTTGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGTTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGCCCAAAATGTGGGAAGCCACTGCCTTCTTCTTCTTCCTCGTACTATCAGCTTCCGTCGAATGCTCCGACGAGATCTCTTGACTTGGGCATCACAAACACTTTCGGTCCACAGCCGGGTTTCGTCGGAGAAATGTACGGTGCCGCGGACTTTCTCCGGTCCATTTCGAGACCTTCAGAAGCCGACAAGCCGGTCATTGTCGAGCTGGCGGTTTCGGCCATGGAGGAATTGACCCGAATGGCTCAGGGCGGCGAACCCTTGTGGGCTCCGGCTGATACCAACTCCAGTGAACTGCTTCTTAACGAAGCTGAGTATTTGAGCAGTTTCCGAAGCGGAATTGGGCCTAAACCCTTGGGCTTGAGAACTGAAGCTTCTCGAGTTTCCGCCATTGTGTTCATCAACCATATTAAGCTTGTGGATATTTTTATGGATGCTACGCAATGGTCGACTGTGTTCTGTGGCATTGTTTCGAGAGCATCGACTGTGGAAGTTCTTTCTGCTGGCCTACCTGGGAACTTCAACGGGGCCTTGCATGTGATGAGCAGTGAATTTCAAGTCCCGTCGCCGCTGGTACCGACACGTGAAAATTACTTCGTAAGATACTGCAAACAGCACAAGGAAGGAACATGGGGGGTGGCTGATGTTTCCTTGGACAGTTTAAGGCCTTCTCCTATCCCCAAGAGTAGAAGGAGACCCTCTGGTTGTTTAATACAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTGGAACATGTAGAAGTGGACGAAACTGGCGTCCCCACAATGTACAGACCGCTGGTTAATTCAGGGCTTGCTTTTGGGGCTAAACGATGGGTGGCTACCTTAGATAGGCAATGTGAACGTTTTGCCTCTTCAATGGCCACCACCATAAATACCGGGGATTTACGCGTGATATCAAGTATTGAAGGGAGGAAGAGTATGCTGAAGCTAGCCGAGAGAATGGTGACGAGCTTTTGCGCCGGCGTTGGCGCGTCGAGTGTACACGCTTGGACGGCATTACCGTCAGCCGGCAGCGACGATGTTCGGGTTGTGACGAGGAAGAGCACGGACGAACCTGGGCGACCACCTGGTATTGTGCTCAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCCAAGGTTGTCTTTGATTTCCTTAGAAAAGAGAAATCTCGTAGCGAGTGGGATATTCTGTCGAATGGGGGCTTGGTTCAAGAAATGGCGCACATAGCCAACGGCCGCCACTCTGGGAATTGTGTCTCCTTACTTCGTGTCAATAGTGCGAATTCGAGTCAGAGCAATATGCTGATTCTACAAGAAAGCTGCACCGACTCAACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTTCGATGAACGTCGTGCTAAGCGGTTGCGACCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCCGACGGACCCGCCGGATCCAACGGTGGAGGAATTCTGGAGCTGGGCTCCGGTGGGTCACTCATCACGGTTGCATTTCAAATCCTGGTTGACTCTGTTCCAACGGCTAGACTTTCAATTGGATCGGTGGCCACCGTTAACAGTCTGATTAAGTGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGTGAAAACCCATGA 2187 50.11 MFDPEMFESHHHMLEVAFNTSENEMENDFEMKGGAEILEDGACGSDPLQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQQERHENAILKAENEKLRAENIRYREAFSHSSCPNCGSSTTLGEMSFDDQHLRIENSRLRDEIERMSGYGPKCGKPLPSSSSSYYQLPSNAPTRSLDLGITNTFGPQPGFVGEMYGAADFLRSISRPSEADKPVIVELAVSAMEELTRMAQGGEPLWAPADTNSSELLLNEAEYLSSFRSGIGPKPLGLRTEASRVSAIVFINHIKLVDIFMDATQWSTVFCGIVSRASTVEVLSAGLPGNFNGALHVMSSEFQVPSPLVPTRENYFVRYCKQHKEGTWGVADVSLDSLRPSPIPKSRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVATLDRQCERFASSMATTINTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPSAGSDDVRVVTRKSTDEPGRPPGIVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVSMNVVLSGCDPDYVALLPSGFAILPDGPAGSNGGGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72715185 72721365 - Hsped.04g17810.1 Hepe04g1781 568919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1781 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 46 723 IPR042160 -
Hepe04g1781 728 FunFam Homeobox-leucine zipper protein GLABRA 2 247 467 - -
Hepe04g1781 728 FunFam Homeobox-leucine zipper protein HDG1 43 127 - -
Hepe04g1781 728 CDD homeodomain 53 112 IPR001356 GO:0003677(InterPro)
Hepe04g1781 728 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677(InterPro)
Hepe04g1781 728 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe04g1781 728 Gene3D - 45 127 - -
Hepe04g1781 728 CDD START_ArGLABRA2_like 242 467 - -
Hepe04g1781 728 SUPERFAMILY Bet v1-like 240 470 - -
Hepe04g1781 728 SUPERFAMILY Bet v1-like 490 720 - -
Hepe04g1781 728 SMART HOX_1 52 115 IPR001356 GO:0003677(InterPro)
Hepe04g1781 728 SUPERFAMILY Homeodomain-like 45 112 IPR009057 -
Hepe04g1781 728 SMART START_1 247 468 IPR002913 GO:0008289(InterPro)
Hepe04g1781 728 Pfam START domain 248 468 IPR002913 GO:0008289(InterPro)
Hepe04g1781 728 Gene3D - 301 472 IPR023393 -
Hepe04g1781 728 Pfam Homeodomain 54 109 IPR001356 GO:0003677(InterPro)
Hepe04g1781 728 Coils Coil 103 137 - -
Hepe04g1781 728 ProSiteProfiles START domain profile. 238 471 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1781 Hepe-Chr4:72715185 Hepe07g0176 Hepe-Chr7:1574301 3.38e-205 dispersed
Hepe01g1298 Hepe-Chr1:78181203 Hepe04g1781 Hepe-Chr4:72715185 5.50e-127 wgd
Hepe02g0212 Hepe-Chr2:2108993 Hepe04g1781 Hepe-Chr4:72715185 0.0 wgd
Hepe04g1781 Hepe-Chr4:72715185 Hepe07g2012 Hepe-Chr7:64331400 0.0 wgd
Hepe04g1781 Hepe-Chr4:72715185 Hepe08g0472 Hepe-Chr8:4138873 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55486 PF01852 START 2.50E-48 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1781 K09338 - csv:101209093 1221.84