Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1782 ATGGCGACCCATCAGCAGCCACTTCTTCAACCTCCCAACACTCCCCGCTCCAAAACCCTCCCCATAATCCTCTGTTTGGCTGCTGTTTTGTGCTCAGCCTTCTTCATCACCAACAAATTGATCAAACCAAACCCATCTGAAAATGATCAAATCAAACCCTTCCTTCACACCATATGCCATAAAGCATACGACCCATCTTCCTGCATTGCAATGGCCGCCTCAGATTTCCCATTTCGTATTCAAGAAACAGAATCCATGACGAACAGGGCTCATTTCTTGCAATTTTTCCTGAGGAAATCCATAACGGACGTAATCAACACAATCGAGAGCGCGAAAGATCTCAGCCGTAGAATCAACAACCCTCGTGGCGAGGCAGCTTTGGCCGATTGTGTAGAGCTCATGGAGATCTCAATGGATCGAATAACCGACTCAATTTCTGCTCTGAAGAACAGAGAAAACGGCTCAATCGAAAACGCCCACACGTGGCTGAGTAGCGTGGTGACGAACCACGTCACGTGCTCGGATGAGGTCGAGAATTCAATTCCCGGAGCGGCGGGCATGGAATTCGATGTAGAGCTTGGAGGGTTGATTAGGAGAGGGAGAAATTGTCTGGGAATGTTGGTTTCGATTTGGGGAGCGAAGGGGGAATTGGGAAATGGGTATCCGAGTTGGGTGAAGAGTGAGGATCGGAGGCTGATGGAGGTTATGGGGAGAGAAATGGAAGCGCCGAGTATAGTGGTGGCGAAGGATGGGAGTGGGGATTTCAAGACGGTGACGGAGGCGGTGGAGGCGGCGCCGGAGAAGAGTAAGAGTAGAATAGTTATATATGTGAAGAAAGGGATTTATGAGGAGAATGTGGAAGTGGGGAAGAAGAAGAAGAATGTGATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGCTAGTCTCAATGTGGTTGATGGTTCAACTACCTTTAAGTCTGCAACTCTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCAGAAACACAGCCGGGCCGGAAAAGCACCAAGCGGTTGCACTTCGGGTCGGAGCAGACCAATCCGTCATCAACCGGTGTCGTATCGACGCTTTCCAAGACACTCTCTACACACATTCCAACCGCCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATTTTCGGCAACGCCGCCGTCGTGTTACAGAACTGCAAAATAGAACCCAGACGACCCATGAGCAACCAGGCCAACATGGTTACGGCCCAAGGACGAATCGACCCAAATCAGAACACTGGAACTTCAATCCAGAGATGCCAAATCGTCGCTAGCTCCGACCTCGAGCCCGTTAAGCAGTCCATTAAGACATATTTGGGTCGCCCGTGGAAGGAATATTCTAGAACCGTTATTATGCAGTCCACAATTGGTGATCTTGTAGATCCAGCGGGCTGGGCCGAGTGGAATGGGGACTTTGCATTAAAGACGCTGTATTACCGTGAGTATTTGAATAATGGGCCGGGCTCTGATGTTACCAAGCGAGTGAAATGGCCCGGTTACCATGTCATTACGAGCCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAAGTGACTGGCTGGGTCCTTCCGGCGTGTCTTTTATCCCAGGGTTGTGA 1668 49.82 MATHQQPLLQPPNTPRSKTLPIILCLAAVLCSAFFITNKLIKPNPSENDQIKPFLHTICHKAYDPSSCIAMAASDFPFRIQETESMTNRAHFLQFFLRKSITDVINTIESAKDLSRRINNPRGEAALADCVELMEISMDRITDSISALKNRENGSIENAHTWLSSVVTNHVTCSDEVENSIPGAAGMEFDVELGGLIRRGRNCLGMLVSIWGAKGELGNGYPSWVKSEDRRLMEVMGREMEAPSIVVAKDGSGDFKTVTEAVEAAPEKSKSRIVIYVKKGIYEENVEVGKKKKNVMIVGDGMDSTIITASLNVVDGSTTFKSATLAAVGDGFIAQDIWFRNTAGPEKHQAVALRVGADQSVINRCRIDAFQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQRCQIVASSDLEPVKQSIKTYLGRPWKEYSRTVIMQSTIGDLVDPAGWAEWNGDFALKTLYYREYLNNGPGSDVTKRVKWPGYHVITSPSEAQKFTVDSLIQGSDWLGPSGVSFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72746132 72749208 - Hsped.04g17820.1 Hepe04g1782 568920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1782 555 FunFam Pectinesterase 238 555 - -
Hepe04g1782 555 SMART PMEI_2 50 206 IPR006501 GO:0004857(InterPro)
Hepe04g1782 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 194 IPR035513 -
Hepe04g1782 555 CDD PMEI-like_4 58 210 - -
Hepe04g1782 555 Pfam Pectinesterase 245 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe04g1782 555 PANTHER PECTINESTERASE 25 544 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe04g1782 555 Pfam Plant invertase/pectin methylesterase inhibitor 54 180 IPR006501 GO:0004857(InterPro)
Hepe04g1782 555 NCBIfam pectinesterase inhibitor domain 27 177 IPR006501 GO:0004857(InterPro)
Hepe04g1782 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Hepe04g1782 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 179 IPR035513 -
Hepe04g1782 555 Gene3D - 239 555 IPR012334 -
Hepe04g1782 555 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1782 Hepe-Chr4:72746132 Hepe06g0790 Hepe-Chr6:54636648 4.48e-141 dispersed
Hepe04g1782 Hepe-Chr4:72746132 Hepe07g0246 Hepe-Chr7:2340813 1.66e-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1782 K01051 - csv:101216377 884.404