Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1801 ATGGCGGCTTCATTTCCGGATGATTTCAAATGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGCTCTTCAATCCAACGCTGGCTCGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCTCCTTCCTCAAAACCCATCTCTAATCCCTAACCACGCCCTCAGAAGCTTAATTTCAAATTTCAATCCAGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCTATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTATGCGAAGGAAATTGACCGAGTCCGGCGCTGTCTCCGCGGTTCTTAAATGCGTTGGTTCCGACGATCCGAGCCTCCAAGAGAAGGCGCTTTCGCTGTTGCTCAATCTCAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGCCTCACCGTCGCTGCTCTTCAAGCCAGGTCCCCCGATTGCAGAGCCGTAGCGGCTACGATGCTGACGAGCTTGGCGGTCGTGGAGGTTAACAAGGCTACAATTGGGGCTTATCCCTATGCGGTTCGATCTCTTGTTTGTCTCTTACGAAACGGCAGCAACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGTAACCGTGTGCGGGCTGTGGAATGTGGGGTTGTTCCAATTTTGCTTAAAATTGCGAATTCTGGGCTGGATAGAGCAGTGGAAGTTCTGGGGCTCTTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGATTCAATGGATGTGTGGAGATTCTGGGACGCGTGTTGAGAAATGGAGCCCCAAGAGGAGTTCAATATGCGCTTCTAACTCTGAGTTCCCTCTGCTGCCACTGTGAACGAATGTGCGTGGAGGCCAGAAGAGAAGGCTTTTTGGGAATATGTATGACATTGATTGATGATGATAACGAAAAGATTAGAGCAAATGCTGCAAATTTGATTCATATACTGCGAGGAAACAACACATGA 1098 50.09 MAASFPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLLLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAMRRKLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVCLLRNGSNREQKEAATALYAICSFPGNRVRAVECGVVPILLKIANSGLDRAVEVLGLLAKCREGREEMQRFNGCVEILGRVLRNGAPRGVQYALLTLSSLCCHCERMCVEARREGFLGICMTLIDDDNEKIRANAANLIHILRGNNT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 72958917 72961659 - Hsped.04g18010.1 Hepe04g1801 568939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1801 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Hepe04g1801 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Hepe04g1801 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Hepe04g1801 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Hepe04g1801 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1801 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Hepe04g1801 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Hepe04g1801 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1801 365 CDD RING-Ubox_PUB 6 50 IPR045210 -
Hepe04g1801 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Hepe04g1801 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Hepe04g1801 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1801 365 Gene3D - 81 268 IPR011989 -
Hepe04g1801 365 Gene3D - 269 365 IPR011989 -
Hepe04g1801 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Hepe04g1801 365 SUPERFAMILY RING/U-box 4 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2039 Hepe-Chr1:85077155 Hepe04g1801 Hepe-Chr4:72958917 5.11e-11 dispersed
Hepe04g1801 Hepe-Chr4:72958917 Hepe07g1836 Hepe-Chr7:61148643 2.19e-36 dispersed
Hepe04g1801 Hepe-Chr4:72958917 Hepe10g1648 Hepe-Chr10:53165737 7.62e-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1801 K27970 - csv:101213883 625.55