Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1828 ATGGGTTCTGCAAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGCTCTTCCTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTGGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACATCGTTACAACTCAGTGGCTTGAATTTGGGAGGAGAACTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAACCATATTGGAGGGAGTATTCCGTCTACATTGCCCGCTACACTAAGAAGTTTTTCTTTATCAACTAATCAATTCACTGGAAGCATTCCCTCTGCACTGGCCTCGCTAACACAATTGATGGACCTGTCATTAAACAATAACCTTCTTACTGGGGTAATACCCGATGTCTTCCAGCAGCTTAATGGCTTGAATAACTTGGATTTGTCTGGCAACAACTTGAGCGGCCAGCTGCCTCCCTCGGTGGCCGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATCAACTTTCTGGGATGCTCGACGCTCTGCAGGATCTTCCATTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGAGGGAAACCCTTTTAATACTACGATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTCTGGCACCCGTGACTGTGGGACAACCGACTAGACAGACAGGCGCAGGTCAGCCATTGTTGTCGGGAACTCCTGATTCTGATGGAGCAAGGAGTTTTTTCTCTCCTAGGCGGATCATTTGGATTGTTATTATTGGCACTGTAATACTAGTGGCGATGGGATTCTGTCTTCTCGTGTCGATATGCTTGAAAAGAAGAAAGCATCGCGAAGATGCCAAGATAGTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCCACGAAGCCCTCGGTTGAAGTTGACGACATGGAGAAAGGTCAAAGGGAGAACACTCTTAAGCCACTTGATAGAGATAGAGTCAAGGATAGAATAATGGATTTTACCACCCCAAGGCCACATGATAGACAAGATGCAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTAGTATAGACCATTCAGAGAGTTCAAGCATAAGCACATATGACTTCCCTGCACCGCCTCCACCTCCTTTTCCTCTCCTTTCAACTCAGGAGATTATGAAACCAATTGTGGCAGCTGAAGTATATAGTAGTAGAGTACCTAAAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATCGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGACAATCTTCTTGGGAGAGGCATGCTTGGCAGTGTATATAGAGCTGAACTTCCAAGTGGAAGGCTTCTAGCTGTTAAAAAACTGAATGGATCCTCTTCAATGCATTGGAGTGATGATGAATTTCACAACCTCGTATCTAATATATGCCAAATTCGGCATGATAACATTGTGGAGCTTGTGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACACTCTATGATTCACTCCATGTTGACAAGGAGATGCATCAAAAGCTTACATGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCACGAGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAAGCACAGGTCTCGGACTCTGGCTTAGCTCTGCTGCTTTCTTCAGCTAGTCAGTCGTCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTCGAGTCAGGAACTTACACGTACCAAAGCGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCATGTGACCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCGTTATCAAGAATGGTCGATCCATCTCTTAATGGCACGTATCCCATTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAAATTGTACAGGGACTTTTACAAATGATCTAG 2259 43.82 MGSANWNLFMKILIGLLFLFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITSLQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGSIPSTLPATLRSFSLSTNQFTGSIPSALASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNNLDLSGNNLSGQLPPSVADLFSLATLHLQNNQLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKEGNPFNTTIIPSAPALAPSPFALAPVTVGQPTRQTGAGQPLLSGTPDSDGARSFFSPRRIIWIVIIGTVILVAMGFCLLVSICLKRRKHREDAKIVRDNADMASKYKPKPTKPSVEVDDMEKGQRENTLKPLDRDRVKDRIMDFTTPRPHDRQDANGKRKDASNTSFSIDHSESSSISTYDFPAPPPPPFPLLSTQEIMKPIVAAEVYSSRVPKKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLNGSSSMHWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDSLHVDKEMHQKLTWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKAQVSDSGLALLLSSASQSSARFLPAHGYSAPEFESGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGTYPIKSLSRFADIISSCIMREPEFRPPISEIVQGLLQMI 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 73243272 73250592 - Hsped.04g18280.1 Hepe04g1828 568966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1828 752 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Hepe04g1828 752 SUPERFAMILY L domain-like 35 237 - -
Hepe04g1828 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1828 752 Pfam Protein tyrosine and serine/threonine kinase 480 747 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1828 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Hepe04g1828 752 MobiDBLite consensus disorder prediction 341 399 - -
Hepe04g1828 752 PANTHER LEUCINE RICH REPEAT KINASE 2 71 750 IPR051420 -
Hepe04g1828 752 MobiDBLite consensus disorder prediction 269 288 - -
Hepe04g1828 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Hepe04g1828 752 Gene3D Ribonuclease Inhibitor 39 254 IPR032675 -
Hepe04g1828 752 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 444 553 - -
Hepe04g1828 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 554 752 - -
Hepe04g1828 752 MobiDBLite consensus disorder prediction 341 420 - -
Hepe04g1828 752 Gene3D Phosphorylase Kinase; domain 1 441 553 - -
Hepe04g1828 752 SUPERFAMILY Protein kinase-like (PK-like) 455 748 IPR011009 -
Hepe04g1828 752 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Hepe04g1828 752 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1828 Hepe-Chr4:73243272 Hepe07g1580 Hepe-Chr7:54699284 9.05e-106 dispersed
Hepe02g2728 Hepe-Chr2:75630747 Hepe04g1828 Hepe-Chr4:73243272 8.27e-06 transposed
Hepe02g0159 Hepe-Chr2:1705438 Hepe04g1828 Hepe-Chr4:73243272 8.37e-180 wgd
Hepe04g1828 Hepe-Chr4:73243272 Hepe05g0024 Hepe-Chr5:264329 3.37e-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72768 PF07714 PK_Tyr_Ser-Thr 1.00E-37 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1828 - - - 0.0