Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1828 ATGGGTTCTGCAAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGCTCTTCCTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTGGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACATCGTTACAACTCAGTGGCTTGAATTTGGGAGGAGAACTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAACCATATTGGAGGGAGTATTCCGTCTACATTGCCCGCTACACTAAGAAGTTTTTCTTTATCAACTAATCAATTCACTGGAAGCATTCCCTCTGCACTGGCCTCGCTAACACAATTGATGGACCTGTCATTAAACAATAACCTTCTTACTGGGGTAATACCCGATGTCTTCCAGCAGCTTAATGGCTTGAATAACTTGGATTTGTCTGGCAACAACTTGAGCGGCCAGCTGCCTCCCTCGGTGGCCGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATCAACTTTCTGGGATGCTCGACGCTCTGCAGGATCTTCCATTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGAGGGAAACCCTTTTAATACTACGATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTCTGGCACCCGTGACTGTGGGACAACCGACTAGACAGACAGGCGCAGGTCAGCCATTGTTGTCGGGAACTCCTGATTCTGATGGAGCAAGGAGTTTTTTCTCTCCTAGGCGGATCATTTGGATTGTTATTATTGGCACTGTAATACTAGTGGCGATGGGATTCTGTCTTCTCGTGTCGATATGCTTGAAAAGAAGAAAGCATCGCGAAGATGCCAAGATAGTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCCACGAAGCCCTCGGTTGAAGTTGACGACATGGAGAAAGGTCAAAGGGAGAACACTCTTAAGCCACTTGATAGAGATAGAGTCAAGGATAGAATAATGGATTTTACCACCCCAAGGCCACATGATAGACAAGATGCAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTAGTATAGACCATTCAGAGAGTTCAAGCATAAGCACATATGACTTCCCTGCACCGCCTCCACCTCCTTTTCCTCTCCTTTCAACTCAGGAGATTATGAAACCAATTGTGGCAGCTGAAGTATATAGTAGTAGAGTACCTAAAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATCGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGACAATCTTCTTGGGAGAGGCATGCTTGGCAGTGTATATAGAGCTGAACTTCCAAGTGGAAGGCTTCTAGCTGTTAAAAAACTGAATGGATCCTCTTCAATGCATTGGAGTGATGATGAATTTCACAACCTCGTATCTAATATATGCCAAATTCGGCATGATAACATTGTGGAGCTTGTGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACACTCTATGATTCACTCCATGTTGACAAGGAGATGCATCAAAAGCTTACATGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCACGAGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAAGCACAGGTCTCGGACTCTGGCTTAGCTCTGCTGCTTTCTTCAGCTAGTCAGTCGTCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTCGAGTCAGGAACTTACACGTACCAAAGCGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCATGTGACCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCGTTATCAAGAATGGTCGATCCATCTCTTAATGGCACGTATCCCATTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAAATTGTACAGGGACTTTTACAAATGATCTAG 2259 43.82 MGSANWNLFMKILIGLLFLFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITSLQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGSIPSTLPATLRSFSLSTNQFTGSIPSALASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNNLDLSGNNLSGQLPPSVADLFSLATLHLQNNQLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKEGNPFNTTIIPSAPALAPSPFALAPVTVGQPTRQTGAGQPLLSGTPDSDGARSFFSPRRIIWIVIIGTVILVAMGFCLLVSICLKRRKHREDAKIVRDNADMASKYKPKPTKPSVEVDDMEKGQRENTLKPLDRDRVKDRIMDFTTPRPHDRQDANGKRKDASNTSFSIDHSESSSISTYDFPAPPPPPFPLLSTQEIMKPIVAAEVYSSRVPKKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLNGSSSMHWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDSLHVDKEMHQKLTWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKAQVSDSGLALLLSSASQSSARFLPAHGYSAPEFESGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGTYPIKSLSRFADIISSCIMREPEFRPPISEIVQGLLQMI 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 73243272 73250592 - Hsped.04g18280.1 Hepe04g1828 568966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1828 752 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Hepe04g1828 752 SUPERFAMILY L domain-like 35 237 - -
Hepe04g1828 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1828 752 Pfam Protein tyrosine and serine/threonine kinase 480 747 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1828 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Hepe04g1828 752 MobiDBLite consensus disorder prediction 341 399 - -
Hepe04g1828 752 PANTHER LEUCINE RICH REPEAT KINASE 2 71 750 IPR051420 -
Hepe04g1828 752 MobiDBLite consensus disorder prediction 269 288 - -
Hepe04g1828 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Hepe04g1828 752 Gene3D Ribonuclease Inhibitor 39 254 IPR032675 -
Hepe04g1828 752 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 444 553 - -
Hepe04g1828 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 554 752 - -
Hepe04g1828 752 MobiDBLite consensus disorder prediction 341 420 - -
Hepe04g1828 752 Gene3D Phosphorylase Kinase; domain 1 441 553 - -
Hepe04g1828 752 SUPERFAMILY Protein kinase-like (PK-like) 455 748 IPR011009 -
Hepe04g1828 752 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Hepe04g1828 752 MobiDBLite consensus disorder prediction 400 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1828 Hepe-Chr4:73243272 Hepe07g1580 Hepe-Chr7:54699284 9.05e-106 dispersed
Hepe02g2728 Hepe-Chr2:75630747 Hepe04g1828 Hepe-Chr4:73243272 8.27e-06 transposed
Hepe02g0159 Hepe-Chr2:1705438 Hepe04g1828 Hepe-Chr4:73243272 8.37e-180 wgd
Hepe04g1828 Hepe-Chr4:73243272 Hepe05g0024 Hepe-Chr5:264329 3.37e-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe07g1580 . 389 682 Strubbelig Receptor Gene Family AT1G11130 53.7 2.1e-85 313.9
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe02g1584 . 11 715 Strubbelig Receptor Gene Family AT1G53730 60.9 7.4e-214 740.7
Hepe03g1378 . 12 710 Strubbelig Receptor Gene Family AT1G53730 61.4 1.8e-191 666.4
Hepe02g1584 . 13 710 Strubbelig Receptor Gene Family AT3G14350 51.5 1.2e-184 643.7
Hepe03g1378 . 21 714 Strubbelig Receptor Gene Family AT3G14350 53.3 8.5e-167 584.3
Hepe07g1580 . 150 712 Strubbelig Receptor Gene Family AT4G22130 64.0 4.8e-176 614.8
Hepe02g1584 . 394 722 Strubbelig Receptor Gene Family AT4G22130 62.8 1.1e-119 427.6
Hepe03g1378 . 403 716 Strubbelig Receptor Gene Family AT4G22130 64.9 1.9e-116 416.8
Hepe02g0159 . 480 775 Strubbelig Receptor Gene Family AT4G22130 61.3 6.2e-107 385.2
Hepe04g1828 . 439 752 Strubbelig Receptor Gene Family AT4G22130 56.2 6.8e-98 355.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72768 PF07714 PK_Tyr_Ser-Thr 1.00E-37 CL0016 Hepe PK