Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1854 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACCAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATCGAACCCTGTTCCTTTTATCATCGAACCACCTCGAAATTCCGGCTTGAAATCGAGGCCTCAATCATCTTCTTCATCCACTCAGAAACCAATTCCTGATATTTCCAAGATTCAACGAAATTTCGCAGCCAACAAGCAGAGGTCTCTGTCTCCTCTTCCAGAGAGCAATCTCTCGGAGGTTTTCAAGGAAGCAAAATCCGACAGTAAGAGATTCTCAACTCCAACTCCTCGGCTTAGAGATCGCACTAAGGAATTCAAGAACAAGCTATTCAACAAGGACCCTCAAGATTCCAAATCGGCCAGTTTCAAGCCATCCTTGAATACCAGTCCCCTGAAACACCTAGCTTCCGCCAAAGGGGCTGATAAGTCAAAGTTCCGGAGGGACTCTTCCTGGACCAAATATTTTGAGTCCGGTGGTGGAAGAGTCACCGCCGTCGAAACAGCCGATGACTGGACTGTTGATCTCTCCAAGTTGTTTCTTGGGTTAAGGTTTGCTCATGGAGTTCACAGTCGTCTTTACCATGGAAAATACAACGATGAACCTGTTGCTGTTAAAATTATTCGAGTTCCCGAGGATGATGACAATGGAGCGCTTGCTTCTCGATTGGAGAAGCAATTCACGAGAGAAGTTACCCTTTTATCTCGCCTCCATCATCCAAATATTCTAAGGTTTGTAGCTGCGTGTAGGAAGCCACCAGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCGTTAAGGGCATACTTGCACAAACTTGAGCACCAATCTCTTCCTTTGCAAAAGCTAGTTGCAGTTGCTTTAGATGTCGCTCGTGGCATGGAATACATTCACTCACAAGGCATAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGACGAGGACTTCCATCTGAAAATTGCAGATTTTGGTATAGCTTGCCCTGAGGCCTTTTTTGACCCGTTAGCTGATGATCCCGGTACTTATCGATGGATGGCACCGGAGATGATCAAACATAAACCCTATGGTCGAAAGGTCGATGTTTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATATTAGGCCTGTTATCTCAAGTGATTGTCCATTGGCAATGCGAGCTTTAATCGAGCAATGTTGGTCCCTACAACCGGAGAAGAGACCGGATTTCTGGCAGGTTGTGAAGGTATTAGAGCAATTCGAGTCTTCGCTTGCCCGTGATGGGACACTGAATTTAATAGGCAACCCTCTGTCTAGTTTTCAAGACCATAAGAAAGGGCTCCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCCGAAACCTCGCCTGTGCCAAAACCGAAATTCTCGTAA 1482 45.21 MDEEANSWLRRTKFSHTVYHRWDSLRSNPVPFIIEPPRNSGLKSRPQSSSSSTQKPIPDISKIQRNFAANKQRSLSPLPESNLSEVFKEAKSDSKRFSTPTPRLRDRTKEFKNKLFNKDPQDSKSASFKPSLNTSPLKHLASAKGADKSKFRRDSSWTKYFESGGGRVTAVETADDWTVDLSKLFLGLRFAHGVHSRLYHGKYNDEPVAVKIIRVPEDDDNGALASRLEKQFTREVTLLSRLHHPNILRFVAACRKPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLVAVALDVARGMEYIHSQGIIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYEDMTPIQAAFAVVNKNIRPVISSDCPLAMRALIEQCWSLQPEKRPDFWQVVKVLEQFESSLARDGTLNLIGNPLSSFQDHKKGLLHWIQKLGPLHPETSPVPKPKFS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 73514455 73518063 - Hsped.04g18540.1 Hepe04g1854 568992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1854 493 PANTHER SERINE-THREONINE PROTEIN KINASE 77 442 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Hepe04g1854 493 MobiDBLite consensus disorder prediction 120 138 - -
Hepe04g1854 493 MobiDBLite consensus disorder prediction 41 60 - -
Hepe04g1854 493 FunFam Serine/threonine-protein kinase isoform 1 174 268 - -
Hepe04g1854 493 SUPERFAMILY Protein kinase-like (PK-like) 167 440 IPR011009 -
Hepe04g1854 493 MobiDBLite consensus disorder prediction 31 60 - -
Hepe04g1854 493 MobiDBLite consensus disorder prediction 89 145 - -
Hepe04g1854 493 SMART serkin_6 184 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 Gene3D Transferase(Phosphotransferase) domain 1 269 461 - -
Hepe04g1854 493 Gene3D Phosphorylase Kinase; domain 1 172 268 - -
Hepe04g1854 493 ProSiteProfiles Protein kinase domain profile. 184 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 FunFam serine/threonine-protein kinase HT1 269 458 - -
Hepe04g1854 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 PRINTS Tyrosine kinase catalytic domain signature 367 389 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 PRINTS Tyrosine kinase catalytic domain signature 302 320 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 PRINTS Tyrosine kinase catalytic domain signature 264 277 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 PRINTS Tyrosine kinase catalytic domain signature 411 433 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 PRINTS Tyrosine kinase catalytic domain signature 348 358 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 MobiDBLite consensus disorder prediction 89 119 - -
Hepe04g1854 493 Pfam Protein tyrosine and serine/threonine kinase 192 440 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1854 493 CDD STKc_MAP3K-like 191 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1854 Hepe-Chr4:73514455 Hepe08g2053 Hepe-Chr8:57646493 1.90e-95 dispersed
Hepe05g1989 Hepe-Chr5:70368892 Hepe04g1854 Hepe-Chr4:73514455 2.42e-24 transposed
Hepe04g1854 Hepe-Chr4:73514455 Hepe05g0029 Hepe-Chr5:289635 8.70e-66 wgd
Hepe04g1854 Hepe-Chr4:73514455 Hepe07g1910 Hepe-Chr7:62827043 2.28e-191 wgd
Hepe04g1854 Hepe-Chr4:73514455 Hepe08g0564 Hepe-Chr8:4931037 3.11e-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72769 PF07714 PK_Tyr_Ser-Thr 2.00E-59 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1854 - - - 0.0