Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1876 ATGGAAGCTGCTGCTTCGGACGACGGCGAAAATCACAACCAGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAAACCCAAGCGCCAGATGAAGACTCCGTTCCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAAACGTACCCATCCGAGTCGATAAGGGCTGAACTGTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAGGAACCGGCGAAGAAACCAAGAAAGGTGGTGACACCGGCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTGGTGGCCGATCCTGGTAGTGATTACGCTTCCGGCTCGGGCTCGGGTTCAAGTCCATTCGGTGGTGATGTTGGGTTGCGGAATGTGGCACCTAGAAGTGCTGGAGATGATATGCCAACCATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGAGAGCCATTGAGGGAGGACGGACCTATTCTTGGGATTGAATTTGATCCATTACCACCTGATGCTTTCGGAGCACCTATAGTGGCAGAACAGCAGAAGCGATCTGGACATTCGTATGCGGACAAATATGAACAACGGGATGCAAAATCAAAAGCGACTTCAAGGGCATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGACCAGTTGCCCAATCACATTATCCAGATTCATTAGTTGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCTTGGTCATGAACAGTTGAACAGGAGCCATAATTACCATGGTCAGGTCTCAAGAGTTCGTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAATTCCATCTCCTGCTGAAGATAGCGCATTTGTCCCTGCAAGGGATTCTTTTGCAAGTAGCAGAATGAATTCTCAGTTTACTGATCATCCAATTGTTGGACAAGAAAATTCGTATGTGTTGCCAGATGGGCATGTTTTTCCAAATGATGCCATCATTAGGATGGAAAGGAAACGCAAGAGTGAAGAGGCTCGTCTGAACAAAGAAGCCGAAGCCCATGAAATAAGAATGCGAAAAGAGCTTGAGAAACAAGATATTTTGAGGAAAAAGAATGAAGAACGAATGAAGAAAGAAATGGAAAAGCAAGATCGCGAAAGAAGGAGAGAAGAGGAGAGGTTACTGCGAGAAAAGCAACGGGAAGTGGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATACGAGGGCTGAGAAGAGGAGGCAAAAAGAAGCTATTCGCAAAGAAAAGGAAGCAGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGATGAACAGCTTGAACTGATGGAACTGGCTGCTGCAAACAAAGGATTATCTTCCATATTAAGTCTTGATCACGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGGTTCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCAGCATTCAACCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTATGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGTGTGAGATTCACATTTGTCTTCTGAGACTGATTGTAAAAGACATTGAAGATGTTTCAAGAACACCTTCTGCTGGATTGGGAATGAATCAGAATGGTGTTGCCAACACTGGAGGTGGACACCCACAGATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAATCCCATTAACATGGCCTGAAATATTTCGACAATTAGCACTATCAGCTGGATTTGGACCACAGTTGAAGAAGAGGAGTTTGGCGTGGTCTGAAATGCGTAGTAATGATGAGGCTAAATGCGGTGAGGACATAGTATCTACTCTTCGCAATGGTTCAGCAGCGGAAAATGCATTTGCTATTATGCAAGAGAAAGGTTTGTTAGCTCCTCGAAGATCTAGGCATCGGCTAACTCCTGGAACTGTCAAATTTGCTGCTTTTCACGTTCTTTCACTAGAAGGAAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACGAGCAAAACACCAGAGGCTTCCATTTCTGTTGCTTTGACGAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGTGTACGATCTCCCTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGATGCCAGAAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGATGAAGAATCTGAATGTGACGATGTTGATGAAGATCCTGAAGTTGATGATGTAGCAACGACATCTTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAGCTTAGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCCACAAAATGAAATTGCCCAAGCTATACCATCGTTCCCCCTAAGTGGTTCCAAGGACGCAAAATATTTAAATATACCTACAGAGCAATATGCTGCCATTGATGAGCCTACTATTAGCGATCTCGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGTTTGAATGCCCTTGTTGCCTTAACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGTTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGGCAGAGGCCCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCACATAGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCGCTATGGAGGGTGGCCAAAGCCCTTTACCTGTTCCTGACATTAAGAACAATGAAGCAACCCCAAGCACTGCAGAAAACCTAGGTAGTGTGCCTAATGAGAGGGCTACTTTAGTGCCAGATCTTTTCCCAGGCCCAGATAGCTTTTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCACAGAGCTGAAGAAATGTACACATACAGGTCCTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGATACTGGCAATTTGTTGCATCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAATGGAGGCTTATTGATTCTGAAGAGGGCTTTGATACTCTTTCGATGGCCTTGGACACACGCGGGGTTAGGGAATCACACCTACGCGTAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTACCAATGTGATGGTTCAAAGTGGAATTACTCCTAAAAATGAAAATGATGAATCAAGTTCAAGTCCTGATTGTAACACTGGTTTTAACAGTCCTAGCAGTACTGTTTGCGGTTTAAATTTGGATACAATGGTTACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAATGAAAAGAAGGCAGCATTTAAAAGGTATCAAGATTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACATTTTGTGCCATGAAATTCGGAGAAAAAAGTTGCACACAGCTATTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTGAACATTCTCATTGCTCTTCGTGCCATCAAACTTTTGCCACTAGTGGGAATGATATTGATTTTTTGGAACACAAACGTCACTGTGAGAGGGAAATGCGGTCTAAACACTGGGATACACACGCTTTAGATGCATCTCTCCCCCTCAAAAGTAGATTGCTCAAAGCCCTCTTAGCTTTCATTGAGGTACATGTTCCGTCAGAAGCTTTTCAATTGTTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAGGAGCTTCTACAGATATTGACCCTGTTTGAAAGTGTAATTAAGCGAGACTTCCTAAAATCAGACTTTACTACAACAGACGAGCACCTGAGCTCATGTTCAATCTCTGGGAATGTTATACATGACCCAGCAGATGTCAGGTCTGTTCTTATATTACCATGGATTCCACGGACTAGTGCGGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCGATTTATTATATCGGTTGTGAGAAACCAGAGCCTGACCAGGATAAGGAAATTGGACAACACGTGGTAATTGATTTTTTCTCTTATTGCAGACGTTATGGGTTCTATCATGAAATAAGTTTATACATGTTTGATTTGTTGTTCGTCAGAATATGTGCCTTGTTGCCAGAAGTGTGTCATTATCCTTCAGAACTGATTTATTTGTCTCTCTGCAGAACTTTCCCAGTAGATATGCCCAGGTTAAGAATTTTGAACGAACTGGACTAA 4659 42.52 MEAAASDDGENHNQNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESIRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVVTPALPDSPIDELRVVADPGSDYASGSGSGSSPFGGDVGLRNVAPRSAGDDMPTMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSGHSYADKYEQRDAKSKATSRAFPEYPFMPDQSNIRADAYGPVAQSHYPDSLVEVSAARTPSFLLGHEQLNRSHNYHGQVSRVRLSQQEKQGVAIPSPAEDSAFVPARDSFASSRMNSQFTDHPIVGQENSYVLPDGHVFPNDAIIRMERKRKSEEARLNKEAEAHEIRMRKELEKQDILRKKNEERMKKEMEKQDRERRREEERLLREKQREVERLKREERREHERREKFLQREYTRAEKRRQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLGSFPPKSVQLKKPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLCEIHICLLRLIVKDIEDVSRTPSAGLGMNQNGVANTGGGHPQIVEGAYAWGFDICNWQKHLIPLTWPEIFRQLALSAGFGPQLKKRSLAWSEMRSNDEAKCGEDIVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRSPYRKDPDDAEEILSDARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDVATTSLVNEDVSKGDASLGVENENLCHDIAGNPQNEIAQAIPSFPLSGSKDAKYLNIPTEQYAAIDEPTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALVALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHIVSKVETELNGSAMEGGQSPLPVPDIKNNEATPSTAENLGSVPNERATLVPDLFPGPDSFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDTLSMALDTRGVRESHLRVMLQMIETSFKENVRRNLQCTNVMVQSGITPKNENDESSSSPDCNTGFNSPSSTVCGLNLDTMVTSSSFRIELGRNENEKKAAFKRYQDLQRWMLRECFSTSTFCAMKFGEKSCTQLLDICDSCLCLFDSEHSHCSSCHQTFATSGNDIDFLEHKRHCEREMRSKHWDTHALDASLPLKSRLLKALLAFIEVHVPSEAFQLFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISGNVIHDPADVRSVLILPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDQDKEIGQHVVIDFFSYCRRYGFYHEISLYMFDLLFVRICALLPEVCHYPSELIYLSLCRTFPVDMPRLRILNELD 1552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 73699112 73712971 - Hsped.04g18760.1 Hepe04g1876 569014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1876 1552 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1106 1178 IPR028941 -
Hepe04g1876 1552 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677(InterPro)
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 8 32 - -
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 390 412 - -
Hepe04g1876 1552 SMART testlast3 546 605 IPR018501 -
Hepe04g1876 1552 Pfam DDT domain 547 602 IPR018501 -
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 1 39 - -
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 829 847 - -
Hepe04g1876 1552 Gene3D - 22 98 - -
Hepe04g1876 1552 Pfam HB1, ASXL, restriction endonuclease HTH domain 728 796 IPR007759 GO:0006355(InterPro)
Hepe04g1876 1552 Coils Coil 353 384 - -
Hepe04g1876 1552 ProSiteProfiles DDT domain profile. 546 605 IPR018501 -
Hepe04g1876 1552 SMART HOX_1 30 92 IPR001356 GO:0003677(InterPro)
Hepe04g1876 1552 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 935 978 IPR028942 -
Hepe04g1876 1552 CDD homeodomain 33 88 IPR001356 GO:0003677(InterPro)
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 205 227 - -
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 114 151 - -
Hepe04g1876 1552 Coils Coil 986 1006 - -
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 826 847 - -
Hepe04g1876 1552 Pfam Homeodomain 31 87 IPR001356 GO:0003677(InterPro)
Hepe04g1876 1552 SUPERFAMILY Homeodomain-like 23 88 IPR009057 -
Hepe04g1876 1552 Coils Coil 388 466 - -
Hepe04g1876 1552 MobiDBLite consensus disorder prediction 209 227 - -
Hepe04g1876 1552 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 1484 IPR044977 GO:0006357(InterPro)
Hepe04g1876 1552 ProSiteProfiles HARE-type HTH domain profile. 728 797 IPR007759 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0265 Hepe-Chr2:2615504 Hepe04g1876 Hepe-Chr4:73699112 0.0 dispersed
Hepe04g1876 Hepe-Chr4:73699112 Hepe08g1868 Hepe-Chr8:47566247 2.69e-64 dispersed
Hepe04g1876 Hepe-Chr4:73699112 Hepe08g1692 Hepe-Chr8:27111111 5.66e-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55499 PF15613 WSD 2.90E-13 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1876 - - - 0.0