Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1879 ATGCCTTTGTTTCCATTCCTCTTCCTCCTCTGTTTTCCTCTGTTTTCCTCCGCCCTCAACCAGGAGGGTCGCCTTCTCCAGGCCTTCAAGCGCTCCATCGAGGATCATAACAATTTCCTCTCCTCCTGGCACGCTGCCGACCCAAATCCCTGTTCATGGAGCGGCGTCACCTGCGACAACAATCTTCAGGTCCTTGCCATCGACCTCTCAAGCTCCGGCATTTCTGCCCCTTTCCCTGCTCATATCTGCAACATTCCTAATCTCCTCTACATTAATCTTTACAATAATTCCTTTCATTCTCTCCTTCCGGAGGAGATTGCCAACTGTACCCATCTCGAGTATCTTGACCTTGGCCAAAATCTTCTCACCGGTCCTCTGCCTTCCTCCCTTGCTGATTTGCGTGATCTCCGTTACTTGGATTTGTCCGGCAACAATTTCTCCGGCGACATTCCACAGAGCTTCTCTCAGTTTGAGAAACTTGAGGCGTTTTCCCTTATTTCGAATCTTATTGGTGGTTCCATTCCTCCGTTTCTTGGGAACATTACTACTCTTAGGATGTTGAATCTGTCTTACAACCCGTTTACGCCCGGAAGAATCCCGCCGGAGCTGGGTAATCTGGTGAACCTTGAGGTTCTTTGGTTGACGGAATGTAATTTAGAGGGGGAGATTCCTGACTCTCTGGGGCAGCTCAAGCAACTCATTCTTCTGGATTTGAGCATGAACACGCTTACTGGGTCGTTCCCGCCGGCGCTGACGGAGTTAACCCACGTCACCCAGATTGAGTTGTTTAACAATTCCTTGACCGGCACGTTACCAAATGGGTTTTCGAAACTGAAGTCGTTGCGGATGCTCGACTTGTCGATGAACCATTTGAGTGGGCCAATTCCGGCTGACTTGTTTCGGTTGCCGCTCGAAAGCCTCAATATATTTGAGAATCAGTTCGAGGGTAGCTTGCCGGAAAGCATGGGGACCTCCAGGACTTTGATGGAGATCAAGCTATTTGGGAACAGATTCTCGGGGGAGTTACCAAAAGATTTGGGGAAATATTCGTATCTGACATCGTTGGACATTTCAGACAACTTCTTTACCGGCAGGCTTCCCGAGGCCTTGTGTGAGAAGGGGGAATTGGTAGAGTTAATGTTGCTCAACAACAAGGTTTCCGGCGAACTCCCGCCGAGTCTCGGCGATTGCCACAGCCTCAGAAGGATCCGATTAGGGAACAACGATTTTACGGGTTATGTACCAGAGAATTTTTGGGGACTTCCCAATGTTAATCTTCTGGAACTTACAAACAACACCTTCTCTGGAACAATCTCAAAGAAAATAGGCAATTCCAAGATGCTGGGTTTGCTTCTTATTTCTCACAACAATTTCTCAGGAACAATTCCGGAGGAGATTGCTTCTTTGCAGTATCTGGTAGAGTTTTCCGGTGACAATAACAAGTTCATAGGAAATTTTCCTCGTGGCCTTACAAAAATGGGAGGGCTTACCAAGTTAGATCTTCAATACAACATGCTTTCCGGGTTGCTCTGCGACAAGCTTGAGGCCTGGGAGAGGCTGAATGAGCTCAATCTTGCCCATAATAACTTCTCTGGGAAAATTCCCCAAGACATTGCTAACTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAACTTACTGGGGAAATCCCACATGGGTTACAGAATCAGAACCTCAATGTTCTTAATCTTTCATTCAATCACTTAACTGGGACGCTTCCTTTCTATTTCCAAACATCAGTGTACAAAAATAGCTTTCTGGGCAATCCTGATTTGTGCAAGGAGAAAAATGGTTTGTGTAATCCAATCGAATCTGAAAGGAAAGCAGCAGCAGGAAGAGCAGGAGGAGGAGGAGGTTGCTATGAGGAAGGAGGAGCTTGCATTTGGTTGCTGGGATCCCTCTTTACATTTTCAGTTATAGTTTTCTCTGTGGGAATAATTTTGTTCCACGTCAAGTACAAGAACTTCCTCCTGGAAAATAGTCACAACGTCAATTCCAGATGGACGCTGGTATCATTCCACAAGGTCTCTTTTAACGAAGACGAGATTGTGGGTTCCCTGGATGAAGACAATGTGATAGGCAGTGGAGGCTCTGGCCAAGTTTACAAAGTCATTCTCGGCAACGGCAAAACCATTGCAGTTAAGAAACTTTGGGCCGAGGTGCCGATGGACCGCAAGAGCATCGATCTCGAGAAAAATTGGAGTGAAGAGAATGTTTTTGATGCAGAAGTGAAGACTTTGGGTAATATCAGGCACAACAACATAGTGAGACTATGGTGTTGTATTAGCAATGGATACATTAAGCTTTTGGTGTATGAATACATGCCTAATGGGAGCTTAGGAGATATGCTTCATGGTAGTAAAAGTGAGTTATTGGATTGGCCTAAAAGATACAAGATTGCCTTGGATGCTGCTGAGGGACTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTTCACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCTGATTTTGGAGCTAGGATAGCAGATTTTGGAGTAGCTATGGTTGTGGATACATCCCAAAATAAATCCATGTCAGTGATTGCTGGTTCTTGTGGTTATATCGCCCCAGAGTATGCTTATACATTGAAAGTGAACGAGAAGACCGACATCTTTAGCTACGGGATGGTTATCCTTGAATTGATAACCGGGAAGTGCCCGACCGACCCCGAGTTTGACGAAAACGATCTGGTGAAATGGGTATGCACCACATTAGAAAAGGAAGGCATTAACCATGTTCTAGACTCCAAATTGGATACATGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCAGCAGCCCTCTACCGATCAGTCGCCCATCGATGAGACAAGTGGTTAAATGGTTGGAAGAACTTCGTACGGATAACTTTTCGAAATTTCGCAGAAAAGATGGAAGTTTGACACCATATGATTTCAAGGATGCTTCTTAG 3003 45.42 MPLFPFLFLLCFPLFSSALNQEGRLLQAFKRSIEDHNNFLSSWHAADPNPCSWSGVTCDNNLQVLAIDLSSSGISAPFPAHICNIPNLLYINLYNNSFHSLLPEEIANCTHLEYLDLGQNLLTGPLPSSLADLRDLRYLDLSGNNFSGDIPQSFSQFEKLEAFSLISNLIGGSIPPFLGNITTLRMLNLSYNPFTPGRIPPELGNLVNLEVLWLTECNLEGEIPDSLGQLKQLILLDLSMNTLTGSFPPALTELTHVTQIELFNNSLTGTLPNGFSKLKSLRMLDLSMNHLSGPIPADLFRLPLESLNIFENQFEGSLPESMGTSRTLMEIKLFGNRFSGELPKDLGKYSYLTSLDISDNFFTGRLPEALCEKGELVELMLLNNKVSGELPPSLGDCHSLRRIRLGNNDFTGYVPENFWGLPNVNLLELTNNTFSGTISKKIGNSKMLGLLLISHNNFSGTIPEEIASLQYLVEFSGDNNKFIGNFPRGLTKMGGLTKLDLQYNMLSGLLCDKLEAWERLNELNLAHNNFSGKIPQDIANLPVLNYLDLSGNQLTGEIPHGLQNQNLNVLNLSFNHLTGTLPFYFQTSVYKNSFLGNPDLCKEKNGLCNPIESERKAAAGRAGGGGGCYEEGGACIWLLGSLFTFSVIVFSVGIILFHVKYKNFLLENSHNVNSRWTLVSFHKVSFNEDEIVGSLDEDNVIGSGGSGQVYKVILGNGKTIAVKKLWAEVPMDRKSIDLEKNWSEENVFDAEVKTLGNIRHNNIVRLWCCISNGYIKLLVYEYMPNGSLGDMLHGSKSELLDWPKRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDADFGARIADFGVAMVVDTSQNKSMSVIAGSCGYIAPEYAYTLKVNEKTDIFSYGMVILELITGKCPTDPEFDENDLVKWVCTTLEKEGINHVLDSKLDTCHQEEMLKVLNIGLLCSSPLPISRPSMRQVVKWLEELRTDNFSKFRRKDGSLTPYDFKDAS 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 73725561 73729114 + Hsped.04g18790.1 Hepe04g1879 569017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1879 1000 FunFam Leucine-rich receptor-like protein kinase family protein 199 297 - -
Hepe04g1879 1000 Pfam Leucine Rich Repeat 280 302 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Pfam Leucine Rich Repeat 451 469 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Pfam Leucine Rich Repeat 184 206 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Pfam Protein kinase domain 698 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1879 1000 FunFam Receptor-like protein kinase HSL1 303 610 - -
Hepe04g1879 1000 SUPERFAMILY RNI-like 47 296 - -
Hepe04g1879 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 181 - -
Hepe04g1879 1000 ProSiteProfiles Protein kinase domain profile. 695 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1879 1000 SUPERFAMILY RNI-like 271 586 - -
Hepe04g1879 1000 Gene3D Ribonuclease Inhibitor 304 617 IPR032675 -
Hepe04g1879 1000 Gene3D Ribonuclease Inhibitor 173 303 IPR032675 -
Hepe04g1879 1000 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524(InterPro)
Hepe04g1879 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 976 IPR050647 -
Hepe04g1879 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1879 1000 SMART LRR_typ_2 85 108 IPR003591 -
Hepe04g1879 1000 SMART LRR_typ_2 206 230 IPR003591 -
Hepe04g1879 1000 SMART LRR_typ_2 493 517 IPR003591 -
Hepe04g1879 1000 SMART LRR_typ_2 133 156 IPR003591 -
Hepe04g1879 1000 SMART LRR_typ_2 541 564 IPR003591 -
Hepe04g1879 1000 SMART LRR_typ_2 278 302 IPR003591 -
Hepe04g1879 1000 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
Hepe04g1879 1000 Gene3D Phosphorylase Kinase; domain 1 679 782 - -
Hepe04g1879 1000 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Hepe04g1879 1000 SMART serkin_6 695 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1879 1000 Gene3D Transferase(Phosphotransferase) domain 1 783 992 - -
Hepe04g1879 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 783 990 - -
Hepe04g1879 1000 Gene3D Ribonuclease Inhibitor 19 172 IPR032675 -
Hepe04g1879 1000 SUPERFAMILY Protein kinase-like (PK-like) 689 974 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0264 Hepe-Chr2:2601834 Hepe04g1879 Hepe-Chr4:73725561 2.48e-141 dispersed
Hepe02g2842 Hepe-Chr2:77496150 Hepe04g1879 Hepe-Chr4:73725561 1.80e-75 dispersed
Hepe04g1879 Hepe-Chr4:73725561 Hepe07g0584 Hepe-Chr7:6351894 1.38e-95 dispersed
Hepe10g0394 Hepe-Chr10:4328805 Hepe04g1879 Hepe-Chr4:73725561 3.39e-53 dispersed
Hepe09g0815 Hepe-Chr9:7965477 Hepe04g1879 Hepe-Chr4:73725561 8.31e-74 transposed
Hepe10g0383 Hepe-Chr10:4209839 Hepe04g1879 Hepe-Chr4:73725561 4.82e-82 transposed
Hepe04g1879 Hepe-Chr4:73725561 Hepe05g0055 Hepe-Chr5:571051 3.55e-42 wgd
Hepe04g1879 Hepe-Chr4:73725561 Hepe07g1890 Hepe-Chr7:62523144 4.82e-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72770 PF00069 Pkinase 5.50E-41 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1879 - - - 0.0