Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1898 ATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAAGAAAGTGAAAACCAGCAGTTCAAAACAAGCTAAGGAGAAATCAAATTCTTTGAAATCGAATAAGTTGCAAAAAGATTCCACGAAGTTTAAAAATGGTGGTACTAATGGGAACAGCAAGTCTCTTGGGATGCCGATTGAAGATGTTGCTGCAGTTCGGATTCAGACGGCATATCGAGCATATCGTGCAAGGAAAATTTTACGTCGCTTGAAAGGAGCTGTGAGACTGCAGAATCTGACTCAAACCAATTCTGTTAGAAAGCATGCTACATCTGCATTAGGCCATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAGAGATTAGAGAATCAACGAAAACTTGAGGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGCGGTGCAGACACCATGGATGAGGTTCTTTCAAGGATACACGAGAGAGAAGAAGCAGCTGTTAAGCGTGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCCCGTCCATGGGAAAGCCGTGTACCATCTCAGTTAGTTAGTCCGAAGAAATCGACTAGTAGGCAATCAAGCAAAGTCAGTAAGAAAAACTCACCATCTCCGAAAGCACGAGTTTTGGTTAAACCTCCTTCCCCAAATGGGAAATCAACTGCAAAGGCTCGGAGGTTATCCTATCCACCAACCGAGAAAACCGAGAAACTGGCCACGGAAGAAAAGAGCGTCAAAAAAAGCGTTAAAGATGATGAAGGAAACACCAAACAAGAAGAAACAGTGTCCTAA 939 43.56 MGSGDWFKTVIRLKKVKTSSSKQAKEKSNSLKSNKLQKDSTKFKNGGTNGNSKSLGMPIEDVAAVRIQTAYRAYRARKILRRLKGAVRLQNLTQTNSVRKHATSALGHLHSWSNIQAQIRARRLCMVTEGRLRQKRLENQRKLEAKLHDIEVEWCGGADTMDEVLSRIHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQLVSPKKSTSRQSSKVSKKNSPSPKARVLVKPPSPNGKSTAKARRLSYPPTEKTEKLATEEKSVKKSVKDDEGNTKQEETVS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 73905450 73911467 + Hsped.04g18980.1 Hepe04g1898 569036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1898 312 ProSiteProfiles IQ motif profile. 60 88 - -
Hepe04g1898 312 PANTHER IQ-DOMAIN 5-RELATED 6 274 - -
Hepe04g1898 312 MobiDBLite consensus disorder prediction 40 55 - -
Hepe04g1898 312 MobiDBLite consensus disorder prediction 278 312 - -
Hepe04g1898 312 MobiDBLite consensus disorder prediction 17 55 - -
Hepe04g1898 312 MobiDBLite consensus disorder prediction 229 312 - -
Hepe04g1898 312 MobiDBLite consensus disorder prediction 231 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1898 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1898 Hepe-Chr4:73905450 Hepe07g0994 Hepe-Chr7:13583939 4.09e-67 dispersed
Hepe04g1898 Hepe-Chr4:73905450 Hepe09g1233 Hepe-Chr9:15956958 1.80e-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2982 . 1 480 IQD Protein Family AT3G52290 53.7 2.4e-103 372.9
Hepe09g1233 . 1 396 IQD Protein Family AT3G22190 58.0 3.7e-96 349.0
Hepe01g1892 . 1 440 IQD Protein Family AT2G26180 60.2 1.4e-119 426.8
Hepe04g1898 . 1 279 IQD Protein Family AT2G33990 52.6 1.4e-64 243.4
Hepe07g0994 . 40 215 IQD Protein Family AT2G33990 54.7 8.0e-49 191.0
Hepe07g0994 . 21 230 IQD Protein Family AT3G15050 56.1 1.0e-56 217.2
Hepe02g2513 . 120 472 IQD Protein Family AT5G13460 50.8 5.4e-74 275.4
Hepe03g1505 . 1 398 IQD Protein Family AT3G16490 51.5 4.2e-70 262.3
Hepe09g0820 . 1 396 IQD Protein Family AT3G16490 51.8 1.6e-69 260.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37