Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1916 ATGGCTGAGGTTCACAGTAGCAACACGGGTGGAATTAAGCTATTTGGCACTATGATCACTTTACAGACCAGAAAAATCAAGGAGGAACCGGAGAAAGGCGGCGGCGGCGGCGGTGGTGTTGATCAAACTGAGATGAAGAGGCCGGAAAAAATAATTCCATGTCCAAGATGTAAGAGCATGGAGACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCCGGCCGCCGGAGAACCAAGCCGCCGCCCAATTGCCGGAGCATTTCCGGCGAAGATTACGGCCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAGTTGGATGCGGTGGAGGGGTGGCATCTCACGGTGGCGGCGGAACAGGATTTCCCCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 510 51.76 MAEVHSSNTGGIKLFGTMITLQTRKIKEEPEKGGGGGGGVDQTEMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRSISGEDYGQLYDAASGIIHQLELDAVEGWHLTVAAEQDFPQVFPLKRQKIIGQHGQTS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74059517 74060026 - Hsped.04g19160.1 Hepe04g1916 569054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1916 169 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g1916 169 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g1916 169 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g1916 169 MobiDBLite consensus disorder prediction 23 45 - -
Hepe04g1916 169 PANTHER CYCLIC DOF FACTOR 2 27 116 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1916 Hepe-Chr4:74059517 Hepe05g0758 Hepe-Chr5:16702254 7.08e-35 dispersed
Hepe04g1916 Hepe-Chr4:74059517 Hepe07g1903 Hepe-Chr7:62718910 3.75e-24 wgd
Hepe04g1916 Hepe-Chr4:74059517 Hepe07g1867 Hepe-Chr7:62206063 3.31e-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55506 PF02701 zf-Dof 2.30E-31 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1916 - - - 0.0