Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1922 ATGGCCGACCGGCCTGACCCCGACAAGAAGTCTGAAACCACCAGGAAGGACATGCCGGCTCTTCTTTTGGGTCGATACGAGATCGGGAAGCTCCTCGGCCATGGCACCTTCGCCAAGGTCTACCACGCCCGCAACATCAAAACCGACGAAAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATTCTCAAGGGCGGTCTAATCGCCCACATCAAACGCGAGATCTCGATCCTCCGCCGCGTTCGACACCCCAATATTGTCCAACTCTTCGAGGTTATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATACGTCCGCGGCGGTGAGCTCTTCAAAAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCCCGAAAGTACTTTCAGCAATTAATCTCCGCCGTTGCCTTTTGCCACGCGCGCGGTGTTTATCATCGCGACCTTAAACCGGAGAATCTGCTGCTCGATGAAAATGGGAATCTCAAGGTCTCCGATTTTGGCCTCAGCGCCGTCTCCGATCAAATTCGACAGGATGGGTTGTTTCATACTTTTTGTGGGACGCCCGCGTATGTTGCTCCGGAGGTTTTGGCCCGGAAAGGGTACGAGGCCGCTAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGTTATTTACCCTTCCACGACCAAAATATTATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTTCGGTGTCCGAGATGGTTCTCGCCGGACCTAATTCGGCTCCTAACTCGTCTATTGGATACAAATCCCGAAACCCGTTTCACAATTCCTGTAATCATGGAGAATAGATGGTTCAAAAAGGGGTATAAGCATATCAAATTCTACATCGAAGACGATAAGGTCTGCAACGTCGAGGAGAACACCGATGATGTCGATGTGGATTCCTTGTCGGATCAATCTCAATCGGAATCGGATTCCGAAATTGTCGAGACCAGAAAGAGGGTGACTTCACTCCCAAGACCGGCGAGTTTGAATGCATTTGATATCATTTCCTTTTCGCCTGGATTTGATCTTTCTGGGTTGTTTGAGGATGGAGGGGAAGGGGTAAGATATGTGTCCAATGCTCCGGTGTCGAAAATTATATCCAAACTGGAGGAGATTGCAAAATTGGTGAGTTTCACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCCCGAGAAGGTGTGACAGGGCCATTAACGATCGCGGCGGAGATATTCGAGTTGACACCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAATTCTGTAATGAGGAATTGAAACCAGCATTGTTGAATCTGAAGGCGGAGGAATCTGCTGCTCCATCACATATACCATCAGATACTGAATGA 1410 49.01 MADRPDPDKKSETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTDESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPDLIRLLTRLLDTNPETRFTIPVIMENRWFKKGYKHIKFYIEDDKVCNVEENTDDVDVDSLSDQSQSESDSEIVETRKRVTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEGVRYVSNAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVTGPLTIAAEIFELTPKLVMVEVKRKGGDKAEYEQFCNEELKPALLNLKAEESAAPSHIPSDTE 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74154937 74157158 - Hsped.04g19220.1 Hepe04g1922 569060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1922 469 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 448 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe04g1922 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1922 469 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Hepe04g1922 469 SUPERFAMILY Protein kinase-like (PK-like) 22 293 IPR011009 -
Hepe04g1922 469 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1922 469 Gene3D Kinase associated domain 1, KA1 337 454 - -
Hepe04g1922 469 FunFam Non-specific serine/threonine protein kinase 336 454 - -
Hepe04g1922 469 CDD STKc_SnRK3 25 279 - -
Hepe04g1922 469 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1922 469 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Hepe04g1922 469 Pfam NAF domain 336 392 IPR004041 GO:0007165(InterPro)
Hepe04g1922 469 FunFam Non-specific serine/threonine protein kinase 16 328 - -
Hepe04g1922 469 ProSiteProfiles NAF domain profile. 334 358 IPR018451 GO:0007165(InterPro)
Hepe04g1922 469 MobiDBLite consensus disorder prediction 307 328 - -
Hepe04g1922 469 Gene3D Transferase(Phosphotransferase) domain 1 17 336 - -
Hepe04g1922 469 CDD CIPK_C 340 450 - -
Hepe04g1922 469 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0692 Hepe-Chr4:60565146 Hepe04g1922 Hepe-Chr4:74154937 3.22e-159 dispersed
Hepe04g1922 Hepe-Chr4:74154937 Hepe09g0586 Hepe-Chr9:5510841 2.63e-173 dispersed
Hepe04g1922 Hepe-Chr4:74154937 Hepe05g0084 Hepe-Chr5:874196 6.09e-08 wgd
Hepe04g1922 Hepe-Chr4:74154937 Hepe07g1910 Hepe-Chr7:62827043 7.36e-24 wgd
Hepe04g1922 Hepe-Chr4:74154937 Hepe07g1855 Hepe-Chr7:61484865 1.91e-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72772 PF00069 Pkinase 1.30E-74 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1922 - - - 0.0