Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1924 ATGACCCCAAAAACTCAATTAGTCATAATTTATCCTACTAGGAAAGTAGTGGGTTCTTCTTACATACTCTCGCTTTCGTTTTTTTTTGTGTCTAGTCTACAACAGTTTGGTTTGGTAATGGAAGTTGTAAAGATGTTTCTGTCGCTGTTCATCCTCATCTGGGTTGTCTCTGCCTCAGACAGTCATTTGTCTCCCAAAGGTGTTAACTATGAAGTGGCGGCTTTGATGTCAGTGAAGAGTAGGTTAAGGGACGAGGGGAGAGTGATGGAGGGTTGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGATTGCTTGCTCTGCTGAGGGCTTTGTGATTTCTCTTGAGATGCCAAATATGGGTTTATCTGGAATGCTTTCCCCTAGCATTGGGAACCTGAGTCACCTTCGGACAATGCTTTTGCAAAGTAATAAGTTATCTGGTCCAATCCCAGATGATATAGGAGCACTTTCAGAGCTTCAGACTCTTGATCTTTCTAGCAACCAGTTTGAAGGAAGCATTCCGAGTTCTTTGGGTTTCCTTACTCGTCTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATTCCGGAATCTGTTGCAAATATCTCAAGCCTTTCCTTCTTGGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAAAATACTTGCCAAAGAGTACAGTGTGGCAGGGAATAGTTTCCTTTGTGAATCTTCATCATCTAAAGTTTGTGGTGTAGTTTCCAAACCAGTTAACGAAACTGGTTCGCCGCAGAAAGATAATGGCCATCATCACCTGTTACTTTCTATAACTCTAATTGTCGGTTTCACATTTGTGGTTTCCATTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTATGTGCAGCAAGATTATGAATTTGATATAGGTCATCTTAAAAGGTTTACTTTCCGTGAACTACAAAAGGCAACATGCAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTCGTTTATAAAGGTTATCTTCCGAATGGGACATACATTGCTGTCAAGAGACTGAAAGATCCAAATTATACAGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCCTGCGTATGTATGGATTTTGTATGATGCCAGATGAGAGGTTGCTCGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGCCTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGAAGATTGAGTATTGCCCTTGGCGCAGCACGCGGACTTCTATACTTACATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTGGATGAAAGCTTTGAAGCTGTGGTCGGGGATTTTGGTCTGGCAAAGATGTTAGATAGGATGGATTCACATGTTACTACTGCAGTAAGGGGCACGGTGGGGCATATTGCCCCAGAATACCTTTCAACTGGACAATCTTCCGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAGCTCTTAACTGGGCAAAAAGCATTAGATGCTGGCAATGGTCAGATTCGAAAAGGAATGATCCTGGAATGGGTTAGAACATTACATGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAGTCACATCCACAACTCAGACCGAAAATGTCCGAGATCTTGAAGGTTTTAGAAGGTCTTGTTGGACAGTCGAGCCAAACAGAGGAATCACCAGGTGTAGCAAGTCTTTATGAGGACAGAGGTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTCGTCGTTGAAGCCATGGAGCTTTCGGGACCTCGGTGA 1968 42.48 MTPKTQLVIIYPTRKVVGSSYILSLSFFFVSSLQQFGLVMEVVKMFLSLFILIWVVSASDSHLSPKGVNYEVAALMSVKSRLRDEGRVMEGWDINSVDPCTWNMIACSAEGFVISLEMPNMGLSGMLSPSIGNLSHLRTMLLQSNKLSGPIPDDIGALSELQTLDLSSNQFEGSIPSSLGFLTRLNYLKLSSNKLSGPIPESVANISSLSFLDLSNNNLSGPTPKILAKEYSVAGNSFLCESSSSKVCGVVSKPVNETGSPQKDNGHHHLLLSITLIVGFTFVVSIVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYIAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRMYGFCMMPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLSIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRMDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKVLEGLVGQSSQTEESPGVASLYEDRGHSFSRNYSDIHEESSFVVEAMELSGPR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74179406 74183171 + Hsped.04g19240.1 Hepe04g1924 569062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1924 655 FunFam Putative LRR receptor-like serine/threonine-protein kinase 68 250 - -
Hepe04g1924 655 SUPERFAMILY L domain-like 70 232 - -
Hepe04g1924 655 Gene3D Ribonuclease Inhibitor 68 250 IPR032675 -
Hepe04g1924 655 Pfam Leucine Rich Repeat 185 205 IPR001611 GO:0005515(InterPro)
Hepe04g1924 655 Pfam Leucine Rich Repeat 161 182 IPR001611 GO:0005515(InterPro)
Hepe04g1924 655 Pfam Leucine Rich Repeat 208 228 IPR001611 GO:0005515(InterPro)
Hepe04g1924 655 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515(InterPro)
Hepe04g1924 655 FunFam Somatic embryogenesis receptor kinase 1 301 407 - -
Hepe04g1924 655 PRINTS Leucine-rich repeat signature 161 174 - -
Hepe04g1924 655 PRINTS Leucine-rich repeat signature 206 219 - -
Hepe04g1924 655 ProSiteProfiles Protein kinase domain profile. 332 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1924 655 Gene3D Transferase(Phosphotransferase) domain 1 408 616 - -
Hepe04g1924 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1924 655 Pfam Leucine rich repeat N-terminal domain 69 108 IPR013210 -
Hepe04g1924 655 Gene3D Phosphorylase Kinase; domain 1 301 407 - -
Hepe04g1924 655 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 46 655 - -
Hepe04g1924 655 FunFam Somatic embryogenesis receptor-like kinase 1 408 621 - -
Hepe04g1924 655 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524(InterPro)
Hepe04g1924 655 Pfam Protein kinase domain 335 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1924 655 SUPERFAMILY Protein kinase-like (PK-like) 314 605 IPR011009 -
Hepe04g1924 655 SMART serkin_6 332 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1924 Hepe-Chr4:74179406 Hepe10g0030 Hepe-Chr10:283159 7.28e-185 dispersed
Hepe04g1924 Hepe-Chr4:74179406 Hepe05g0096 Hepe-Chr5:1032716 3.25e-70 wgd
Hepe04g1924 Hepe-Chr4:74179406 Hepe07g1913 Hepe-Chr7:62881218 3.37e-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72774 PF00069 Pkinase 2.30E-43 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1924 - - - 0.0