Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g1948 | ATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCACTGGCGCCGGATGGCCACCTCGAAGATTTGGAGGAGCTTGTCAAGCAGCACGAAACTGCTGGAGAGGAGGTAGATCCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATCAACTGTTGGATTCGGGAGTCGATGTCAACTTCCATGATATCGATCACCGGACTGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTTGATTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATTGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTTTGGAAAAGCATGGTGCAAAGCCTCCGGTGGCTCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACCAAGAGTGTGAATATTACCAAGGGAACATTCCGCATAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGATCTATTCACTGATGAGGATAAAGTGAGAGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTGGTCCAGTTTCTAGGTGCTGTTACTCAAAGTTGCCCAATGATGATCATCACAGAATATTTGCCAAAGGGAGATCTTGGAGCATTATTGAGTAGAAAAGGAGCAATAAAAATAATGTCTGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAACTATTTGCACGAGAACAAGCCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGACTTTGGAGTTAGCAAGTTATTGACTGTCAAAGAGGATAAACCTTTGTCGCGTTCAGATACTTCTCGAAGATATGAGGCTCCGGAGGTTTTCAAAAATGAAGATTATGATACGAAGGTGGACGTATTTTCATTTGCTTTGATTCTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGCCAGACAGTGAGATTCCTAAATTGTATGCGGCAGGAGAACGTCCCCCATTTGGAGTACCACTTAAACGTTATGCAAATGGATTAAAAGAGCTAATTGAAGAATGCTGGAACGAAAAGCCAACCAAGAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCGCTGTTGAAGAAAGATCGTTCCCGTCGAAGCAGTTTCAATCTATCAACACATTCTTCTGCCAGCAGTATATGA | 1374 | 44.47 | MKSPVRFKLGKQSSLAPDGHLEDLEELVKQHETAGEEVDPRVRLMYLANEGDLEGINQLLDSGVDVNFHDIDHRTALHIAACQGFADVVDLLLERGAEVDSKDCWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTKSVNITKGTFRIASWRGTEVAVKELGDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIITEYLPKGDLGALLSRKGAIKIMSVVRLALDIARGMNYLHENKPPIIHRDLEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLSRSDTSRRYEAPEVFKNEDYDTKVDVFSFALILQEMIEGCPPFPDKPDSEIPKLYAAGERPPFGVPLKRYANGLKELIEECWNEKPTKRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEALLKKDRSRRSSFNLSTHSSASSI | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 74362356 | 74366894 | + | Hsped.04g19480.1 | Hepe04g1948 | 569086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g1948 | 457 | Pfam | Protein tyrosine and serine/threonine kinase | 162 | 408 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe04g1948 | 457 | ProSiteProfiles | Ankyrin repeat profile. | 72 | 104 | IPR002110 | GO:0005515(InterPro) | |
Hepe04g1948 | 457 | ProSiteProfiles | Protein kinase domain profile. | 122 | 411 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe04g1948 | 457 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 453 | - | - | |
Hepe04g1948 | 457 | SUPERFAMILY | Protein kinase-like (PK-like) | 165 | 416 | IPR011009 | - | |
Hepe04g1948 | 457 | SMART | ANK_2a | 72 | 101 | IPR002110 | GO:0005515(InterPro) | |
Hepe04g1948 | 457 | SMART | ANK_2a | 39 | 68 | IPR002110 | GO:0005515(InterPro) | |
Hepe04g1948 | 457 | SMART | ANK_2a | 105 | 134 | IPR002110 | GO:0005515(InterPro) | |
Hepe04g1948 | 457 | Pfam | Ankyrin repeats (3 copies) | 44 | 132 | IPR002110 | GO:0005515(InterPro) | |
Hepe04g1948 | 457 | ProSiteProfiles | Ankyrin repeat region circular profile. | 72 | 103 | - | - | |
Hepe04g1948 | 457 | FunFam | Integrin-linked protein kinase family | 232 | 424 | - | - | |
Hepe04g1948 | 457 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 61 | 409 | IPR051681 | GO:0004674(PANTHER) | |
Hepe04g1948 | 457 | FunFam | Integrin-linked protein kinase family | 23 | 148 | - | - | |
Hepe04g1948 | 457 | Gene3D | Phosphorylase Kinase; domain 1 | 149 | 231 | - | - | |
Hepe04g1948 | 457 | SUPERFAMILY | Ankyrin repeat | 43 | 134 | IPR036770 | - | |
Hepe04g1948 | 457 | CDD | STKc_MAP3K-like | 171 | 408 | - | - | |
Hepe04g1948 | 457 | Gene3D | - | 11 | 144 | IPR036770 | - | |
Hepe04g1948 | 457 | PIRSF | ILK | 2 | 431 | - | - | |
Hepe04g1948 | 457 | FunFam | serine/threonine-protein kinase STY46-like | 150 | 232 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g1948 | Hepe-Chr4:74362356 | Hepe10g1770 | Hepe-Chr10:54466366 | 3.44e-74 | dispersed | |
Hepe04g1948 | Hepe-Chr4:74362356 | Hepe07g1822 | Hepe-Chr7:60994318 | 4.19e-163 | wgd | |
Hepe04g1948 | Hepe-Chr4:74362356 | Hepe08g0608 | Hepe-Chr8:5332018 | 1.12e-162 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
72775 | PF07714 | PK_Tyr_Ser-Thr | 3.20E-53 | CL0016 | Hepe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g1948 | - | - | - | 0.0 |