Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1948 ATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCACTGGCGCCGGATGGCCACCTCGAAGATTTGGAGGAGCTTGTCAAGCAGCACGAAACTGCTGGAGAGGAGGTAGATCCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATCAACTGTTGGATTCGGGAGTCGATGTCAACTTCCATGATATCGATCACCGGACTGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTTGATTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATTGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTTTGGAAAAGCATGGTGCAAAGCCTCCGGTGGCTCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACCAAGAGTGTGAATATTACCAAGGGAACATTCCGCATAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGATCTATTCACTGATGAGGATAAAGTGAGAGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTGGTCCAGTTTCTAGGTGCTGTTACTCAAAGTTGCCCAATGATGATCATCACAGAATATTTGCCAAAGGGAGATCTTGGAGCATTATTGAGTAGAAAAGGAGCAATAAAAATAATGTCTGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAACTATTTGCACGAGAACAAGCCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGACTTTGGAGTTAGCAAGTTATTGACTGTCAAAGAGGATAAACCTTTGTCGCGTTCAGATACTTCTCGAAGATATGAGGCTCCGGAGGTTTTCAAAAATGAAGATTATGATACGAAGGTGGACGTATTTTCATTTGCTTTGATTCTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGCCAGACAGTGAGATTCCTAAATTGTATGCGGCAGGAGAACGTCCCCCATTTGGAGTACCACTTAAACGTTATGCAAATGGATTAAAAGAGCTAATTGAAGAATGCTGGAACGAAAAGCCAACCAAGAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCGCTGTTGAAGAAAGATCGTTCCCGTCGAAGCAGTTTCAATCTATCAACACATTCTTCTGCCAGCAGTATATGA 1374 44.47 MKSPVRFKLGKQSSLAPDGHLEDLEELVKQHETAGEEVDPRVRLMYLANEGDLEGINQLLDSGVDVNFHDIDHRTALHIAACQGFADVVDLLLERGAEVDSKDCWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTKSVNITKGTFRIASWRGTEVAVKELGDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIITEYLPKGDLGALLSRKGAIKIMSVVRLALDIARGMNYLHENKPPIIHRDLEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLSRSDTSRRYEAPEVFKNEDYDTKVDVFSFALILQEMIEGCPPFPDKPDSEIPKLYAAGERPPFGVPLKRYANGLKELIEECWNEKPTKRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEALLKKDRSRRSSFNLSTHSSASSI 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74362356 74366894 + Hsped.04g19480.1 Hepe04g1948 569086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1948 457 Pfam Protein tyrosine and serine/threonine kinase 162 408 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1948 457 ProSiteProfiles Ankyrin repeat profile. 72 104 IPR002110 GO:0005515(InterPro)
Hepe04g1948 457 ProSiteProfiles Protein kinase domain profile. 122 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1948 457 Gene3D Transferase(Phosphotransferase) domain 1 232 453 - -
Hepe04g1948 457 SUPERFAMILY Protein kinase-like (PK-like) 165 416 IPR011009 -
Hepe04g1948 457 SMART ANK_2a 72 101 IPR002110 GO:0005515(InterPro)
Hepe04g1948 457 SMART ANK_2a 39 68 IPR002110 GO:0005515(InterPro)
Hepe04g1948 457 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Hepe04g1948 457 Pfam Ankyrin repeats (3 copies) 44 132 IPR002110 GO:0005515(InterPro)
Hepe04g1948 457 ProSiteProfiles Ankyrin repeat region circular profile. 72 103 - -
Hepe04g1948 457 FunFam Integrin-linked protein kinase family 232 424 - -
Hepe04g1948 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 61 409 IPR051681 GO:0004674(PANTHER)
Hepe04g1948 457 FunFam Integrin-linked protein kinase family 23 148 - -
Hepe04g1948 457 Gene3D Phosphorylase Kinase; domain 1 149 231 - -
Hepe04g1948 457 SUPERFAMILY Ankyrin repeat 43 134 IPR036770 -
Hepe04g1948 457 CDD STKc_MAP3K-like 171 408 - -
Hepe04g1948 457 Gene3D - 11 144 IPR036770 -
Hepe04g1948 457 PIRSF ILK 2 431 - -
Hepe04g1948 457 FunFam serine/threonine-protein kinase STY46-like 150 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1948 Hepe-Chr4:74362356 Hepe10g1770 Hepe-Chr10:54466366 3.44e-74 dispersed
Hepe04g1948 Hepe-Chr4:74362356 Hepe07g1822 Hepe-Chr7:60994318 4.19e-163 wgd
Hepe04g1948 Hepe-Chr4:74362356 Hepe08g0608 Hepe-Chr8:5332018 1.12e-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72775 PF07714 PK_Tyr_Ser-Thr 3.20E-53 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1948 - - - 0.0