Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1949 ATGTCAGATTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTAACTTTCTGCAAGAGGCGAAATGGGCTGCTCAAAAAGGCTTATGAACTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCTTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAGCAAGAGGCTGCGAAACTCCGAGTTCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGCTGGGTGAGTCTATAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGGTTGCTTTTCATTTCAATTCATTCTTGTTTTTGAACAATCTCCTCTCTCTTAAAATAATATTATTTCTTTTTGGTCTCTTTTTCTTCCAGAATGAACTCCTGTTTGCTGAAGTTGAGTATATGCGGAAAAGGGAAATTGACTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTCAACATGATGGGAGGAGATTTCGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACTTAATCAACAGTATCCCCGCCAAGACAACATGTCTCTTCAATTAGTATAA 780 40.26 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESISSLSVKDLKSLESKLEKGISRIRSKKVAFHFNSFLFLNNLLSLKIILFLFGLFFFQNELLFAEVEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGDFELMQSHPYDPRDFFQVNGLQLNQQYPRQDNMSLQLV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74374283 74380888 + Hsped.04g19490.1 Hepe04g1949 569087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1949 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 Gene3D - 21 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe04g1949 259 ProSiteProfiles K-box domain profile. 95 215 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe04g1949 259 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 229 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe04g1949 259 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 FunFam agamous-like MADS-box protein AGL11 21 104 - -
Hepe04g1949 259 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1949 259 Pfam K-box region 91 155 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe04g1949 259 SMART madsneu2 9 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1949 Hepe-Chr4:74374283 Hepe07g0369 Hepe-Chr7:3752332 1.94e-43 dispersed
Hepe04g1949 Hepe-Chr4:74374283 Hepe07g1821 Hepe-Chr7:60982597 8.14e-81 wgd
Hepe04g1949 Hepe-Chr4:74374283 Hepe08g0613 Hepe-Chr8:5370745 9.90e-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55511 PF01486 K-box 1.90E-24 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1949 K09264 - csv:101221430 390.578