Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1971 ATGGAGAAAGAGCCTCTTCTTCCGTATATGAGTCCTAGAGGGAAACCGCTTTTTCCTCCTCAATTATTCCCACTCCCTGAAAACGATGAAATTACTCTGCCTATGACGCCCACGGAGTTCAAAGACCGCCTGATCTTTGGCCCTTCGTCGTCCCCGCAAGACGCTTCTCCTATATTTGACGCCTTGACGCTATCTATTTCTACCGCCAGACCCTCTGGTTCATCTTCTCTGCAGGACCCATCTACCCCTTTCGACCCCAAATCCCAATCGCAGTCTCCTATGGCGTGGCTTGTGGATTCCAATTCAGCATGGCCCAAAAGCAACCTCCACCGCTCCAAAACCGCACCTGCCATGGCGGTCATCAACGATGTCACCCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAGTCTATTATCCGCCAAGCTGTTGTTCTTCTTATTATTTACTTGTCCTTGGGCGTGGTTATCTATTGGATTAATCGTGATAATTTTTCGGCTAACGAGACTCATCCTGTAGTCGATGCATTGTACTTTTGCATTGTGACGATGTGCACAATTGGGTATGGAGATATTACGCCAAATAGCGCGGCGACGAAGCTGTTCTCAGTGTTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAAGGGGGGTTGCAGAAAGAGTCTGGGAAATCTTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCTTAGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTTTTATGCATTTTGTTGAGGACCTGGGTTGGTTGGATTCATTTTATCTTTCGGTCATGTCTGTTACGACGGTTGGATATGGTGATCAGGCATTCAACTCCATGACTGGTCGTATTTTTGCTTCAATCTGGTTGCTTGTATCGACCCTAGCTGTTGCTCGGGCATTTCTTTATTTAGCCGAGGCAAGAGTAGATAAGCGGCATAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACCGTCTCTGAGTTTCTTGCTGCTGATACTGACAACAACGGCTGTGTGAGTAGGTCAGAATATGTGATATTCAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACGGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 1275 45.1 MEKEPLLPYMSPRGKPLFPPQLFPLPENDEITLPMTPTEFKDRLIFGPSSSPQDASPIFDALTLSISTARPSGSSSLQDPSTPFDPKSQSQSPMAWLVDSNSAWPKSNLHRSKTAPAMAVINDVTHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDNFSANETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKGGLQKESGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGFMHFVEDLGWLDSFYLSVMSVTTVGYGDQAFNSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADTDNNGCVSRSEYVIFKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74549723 74555469 + Hsped.04g19710.1 Hepe04g1971 569109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1971 424 PRINTS Two pore domain K+ channel signature 302 311 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Hepe04g1971 424 PRINTS Two pore domain K+ channel signature 182 210 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Hepe04g1971 424 SUPERFAMILY Voltage-gated potassium channels 140 230 - -
Hepe04g1971 424 Pfam Ion channel 271 340 IPR013099 -
Hepe04g1971 424 Pfam Ion channel 146 225 IPR013099 -
Hepe04g1971 424 SUPERFAMILY EF-hand 361 421 IPR011992 -
Hepe04g1971 424 FunFam Two-pore potassium channel 3 247 361 - -
Hepe04g1971 424 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Hepe04g1971 424 MobiDBLite consensus disorder prediction 70 92 - -
Hepe04g1971 424 Gene3D - 269 332 - -
Hepe04g1971 424 Gene3D - 136 234 - -
Hepe04g1971 424 Gene3D - 333 424 - -
Hepe04g1971 424 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 144 371 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
Hepe04g1971 424 MobiDBLite consensus disorder prediction 1 30 - -
Hepe04g1971 424 FunFam Two-pore potassium channel 5 128 238 - -
Hepe04g1971 424 SUPERFAMILY Voltage-gated potassium channels 254 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1971 Hepe-Chr4:74549723 Hepe07g1454 Hepe-Chr7:48599026 1.26e-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1971 K05389 - csv:101220017 762.681