Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1972 ATGTCAGATGAACTTTTTAGAGATCTATTTTTCTCGAACCCTCTTCGAGATGGTGGGTTCGGTTCCATGGACGACTACGAGTCTCTAGCGAGAGCTTTTGAGCTGTCGGGTAATTCGAATGACATTTCGGGGACTCCGATGAATTCTTGTGGTTCGTTGTCGTCTTCCGATGCCGGAGCTGAGGAGGATGATTCTCTCAAAGACAAGGATAAGCAGATCAAAGAGATCGACGATGATGGAGGAGATACTTCTAAGGCTGCTGCTGCGGCTAAATCGAAGAAGAAAGGAGAGAAGAAAGAGAAAGAACCGAGATTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGTGCTTATCCCAGGAGCTATTACAGATGCACAACTCAAAAATGTGGAGTGAAGAAACGGGTAGAAAGATCGTTCGAAGATCCATCCATTGTAATTACGACGTACGAAGGCCAACACAACCACCCAATCCCAGCAACACTAAGGGGAAGCCTTACGGCGGCCGCGGCCGCGTTTCCACCGTCTATGTTGACACAAATGCCGGTGGTCGGTGGCGTCGGGTTTCTTCCTGAATTGTTGAACAATGCTTCCAGCAATAACCAAGTCGTCGGTGGCGGCGGCAGCTCCGCTTATTCACAGAGCAGCTTCGGCTATTCTTATAACGGGCGGCAACCGGAATATGGGCTTCTGCAGGACATATTTCCGGCACCGTCGTCTTTCTTCAACCGACAACCGTGA 792 48.61 MSDELFRDLFFSNPLRDGGFGSMDDYESLARAFELSGNSNDISGTPMNSCGSLSSSDAGAEEDDSLKDKDKQIKEIDDDGGDTSKAAAAAKSKKKGEKKEKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPIPATLRGSLTAAAAAFPPSMLTQMPVVGGVGFLPELLNNASSNNQVVGGGGSSAYSQSSFGYSYNGRQPEYGLLQDIFPAPSSFFNRQP 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74567774 74569655 + Hsped.04g19720.1 Hepe04g1972 569110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1972 263 Pfam WRKY DNA -binding domain 117 174 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1972 263 SUPERFAMILY WRKY DNA-binding domain 108 176 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1972 263 FunFam WRKY transcription factor 57 102 176 - -
Hepe04g1972 263 SMART WRKY_cls 116 175 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1972 263 ProSiteProfiles WRKY domain profile. 111 176 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1972 263 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 184 IPR044810 GO:0003700(InterPro)
Hepe04g1972 263 MobiDBLite consensus disorder prediction 60 103 - -
Hepe04g1972 263 MobiDBLite consensus disorder prediction 37 103 - -
Hepe04g1972 263 MobiDBLite consensus disorder prediction 37 59 - -
Hepe04g1972 263 Gene3D WRKY domain 94 177 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0037 Hepe-Chr2:527099 Hepe04g1972 Hepe-Chr4:74567774 2.17e-52 dispersed
Hepe02g1159 Hepe-Chr2:14423808 Hepe04g1972 Hepe-Chr4:74567774 3.45e-44 dispersed
Hepe03g0037 Hepe-Chr3:425163 Hepe04g1972 Hepe-Chr4:74567774 3.47e-45 dispersed
Hepe04g1154 Hepe-Chr4:66707519 Hepe04g1972 Hepe-Chr4:74567774 7.83e-33 dispersed
Hepe04g1972 Hepe-Chr4:74567774 Hepe05g1368 Hepe-Chr5:62322167 5.26e-42 dispersed
Hepe04g1972 Hepe-Chr4:74567774 Hepe08g0620 Hepe-Chr8:5443619 9.56e-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55512 PF03106 WRKY 8.20E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1972 - - - 0.0