Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1975 ATGGCTTCTAGCCTCAGTTTAGCCATTTTCACGATAGCTAGTTTTGTTCTACTTAGGGTTCTATTTGCCCAACACCAATCGCCCATGGAAGTTGAACTTGATGCCTTAAAGGCCTTCAAGAGCTCCATCCATTTCGACCCATTGGGAGCACTTTCAGATTGGACGGACCTAAACCATCACTGCAATTGGTCTGGAATTCTCTGTGACTCTGATTCCAGGCGGGTCATTTCGATTACTTTGCTTGATCAGCAGCTTAAAGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCCAGGTTCTTGATTTGACTCAGAATTCGTTTACCGGGAAGATTCCAGGTGAGTTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAATCTTCTTTCAGGTCACATTCCATCCCAGTTGGGAAACCTTGGCCTCCTGCAATTAGTTGATTTGGGAGATAACTTCTTAAAAGGAAGCATTCCTGAGAGCATTTTCAATTGCACCAACTTGTTAGCAATTGGTGTGGTATTTAATAATCTCACGGGCAGATTCCCATCAAACATAGGAAACTTGGTCAATCTTCAAATTCTGGTTGCATATGGCAACAAGCTAGAAGGTTCCATTCCCATCTCGATTGGCAAATTAGACGCACTGCAAAGTCTAGATTTTAGCCAGAACAACTTTTCTGGGAATATACCAGTGGAGATTGGGAATTTGTTGAATCTGGAGTATCTTGTATTGTTTGAGAATGCTTTGGTTGGGAAAATTCCGGAGGAAATAGGTAAATGTGAGAAGCTTCTTGCTCTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAGCTAGGCTCTCTGGTTCGCTTACAAACCTTGCGTCTTTATACAAATAGATTAAATTCCACTGTACCACAATCTCTCTTTCAGTTGAAAGGCTTGACCCATTTGCTTCTTGCAGAGAATGAGTTAAGTGGAACTATATCCTCTGATATTGGATCTTTAAGATCATTGCAGGTTTTGACTCTTCACTCGAATGGGTTCTCTGGGGTAATTCCTTCATCTTTGACAAACTTGTCAAACCTTACACATTTGTCTCTGAGCTTCAATTTTTTCACAGGAGAGATTCCATCCAATATAGGTTTGCTTTATAATCTGAAGAGATTGACATTGACCGACAATCTCCTAGCGGGTTCAATTCCATCTAGTATTACCAACTGCACCCAGCTTTTGATCATTGATCTTTCATCTAATAGGCTGACAGGGAAAATACCTCTGGGATTCGGGAAGTTGCGGAATCTTACTACCCTCTTGATTGGAAGAAATAGGATTTTTGGTGAAATCCCAGACGACTTCTTTAATTGCTCATCTCTTGAGGTTGTAGACCTGGCTCTAAACAATTTCACTGGATTGTTAAAATCCAGTATTAGCAAGCTTTCCAATATCCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAAGGGACATTGGCAACTTAAGCAGACTCATCACATTAGTACTTGCAGAAAATAATTTTTCAGGTCAAATTCCTGGGGAGTTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCAGAAAAAATATTTGATCTGAAACAACTGGATCATCTTCATTTGCAGAACAACAAGTTCATAGGTCCAATTCCAGATGCCATCTCAAAACTAGAGTTTCTTTCATATTTGGATCTCCACGGTAACATGCTTAATGGATCCATTCCTAAAAGTATGAGGAATCTTCATCAACTTGTGATGTTAGATCTGTCCAACAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAAATATGCAGCTATACATGAACTTGTCATACAATTTCCTGGTAGGAGGTATTCCAACTGAGCTTGGGTTGTTGCAAATGATACAATCCATCGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCAACAATTGGAGGCTGTAGAAATTTGTTCGTTCTTGATCTCTCAGGAAATGATCTTTCTGGTATGCTTCCAGGTAAAGCTTTTACTGGAATGAATATGCTCACGAACTTGAACCTTTCACGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTGGCAAACCTGGAGCACTTGTACTCTTTGGACCTTTCTCAGAATCAATTCAATGGCAGCATCCCTCAGAACATTGCAAAGCTTTCATCTCTAAAGCATGTTAACCTTTCCTTCAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCCAAAAATAAATGCGTCAAGCTTGATAGGAAATCGTGCTCTTTGTGGATCCAAGTTCTTTGCTCCTTGTGGGAAGAAGGATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGGTCTATTATTGTCATCTTAGCTATAATTTGCTTAATTCTAGGCCTTGACCGGTATCGTAAGCTTGAGAAATCTAAAAGTATTGAGAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGATATGGAGATTGCAACAGAATACTTTAGTGAAAACAACACTCTAGGTTCCAGTACTTTAAGCACTGTCTACAGGGGTCAACTGGAAAATGGGCAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTCTCTGCAGAATCAGATGATTACTTCAGTAGAGAAATCAAGATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTCGGATACGCTTGGGAAAGCCAGAAACTGAAGGCTATCGTTCTTGGATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATAAGTTGGACATTGTCAAAGAGAGTTGATATTTGTGTTTCTGTTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGTGACTTGAAACCTTCAAACATCCTTCTGGATGGAGACTGGATAGCCCATGTGAGCGATTTCGGAACTGCTAGAGTGTTGGGGTTGCACAGCCAAGACACAATCAGCATTTCCTCTTCAGCAGCTTTTGAAGGCACTATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGTCAACAAAAGTAGACGTGTTCAGTTTTGGAGTAATACTGATGGAACTTCTGACAAAGAAAAGGCCAACTGCAACCATCGAAGTTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGGGAGCTCTAGCAAATGGAAAGGAAGGGCTTATTCAAGTTTTGGATCCTGGGCTGGTCTTGAATTATTCAAAGGAGCAACAGAGGTTAGAAGAACTACTCAAACTAGCACTAAGCTGTACCGACCAAAATCCTGAGAATAGACCTGACATGAATGAAGTTCTGTCTACCCTTCTGAAGCTGCAGAGAGATGAATAG 3480 40.49 MASSLSLAIFTIASFVLLRVLFAQHQSPMEVELDALKAFKSSIHFDPLGALSDWTDLNHHCNWSGILCDSDSRRVISITLLDQQLKGEISPFIGNLSALQVLDLTQNSFTGKIPGELGSCSNLSQLTLYRNLLSGHIPSQLGNLGLLQLVDLGDNFLKGSIPESIFNCTNLLAIGVVFNNLTGRFPSNIGNLVNLQILVAYGNKLEGSIPISIGKLDALQSLDFSQNNFSGNIPVEIGNLLNLEYLVLFENALVGKIPEEIGKCEKLLALELYNNKFSGPIPSQLGSLVRLQTLRLYTNRLNSTVPQSLFQLKGLTHLLLAENELSGTISSDIGSLRSLQVLTLHSNGFSGVIPSSLTNLSNLTHLSLSFNFFTGEIPSNIGLLYNLKRLTLTDNLLAGSIPSSITNCTQLLIIDLSSNRLTGKIPLGFGKLRNLTTLLIGRNRIFGEIPDDFFNCSSLEVVDLALNNFTGLLKSSISKLSNIRVFRAASNSFSGEIPRDIGNLSRLITLVLAENNFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLDHLHLQNNKFIGPIPDAISKLEFLSYLDLHGNMLNGSIPKSMRNLHQLVMLDLSNNHLSGSIPGVLISGMKNMQLYMNLSYNFLVGGIPTELGLLQMIQSIDFSNNNLTGIIPATIGGCRNLFVLDLSGNDLSGMLPGKAFTGMNMLTNLNLSRNKIAGEIPEELANLEHLYSLDLSQNQFNGSIPQNIAKLSSLKHVNLSFNQLEGPVPDTGIFPKINASSLIGNRALCGSKFFAPCGKKDLRHLSKKTLLILITLGSIIVILAIICLILGLDRYRKLEKSKSIENPEPSLDYACTLKRFDKKDMEIATEYFSENNTLGSSTLSTVYRGQLENGQIVAVKRLNLQYFSAESDDYFSREIKILCQLRHRNLVKVLGYAWESQKLKAIVLGYMENGNLDRIIHNPGTDQISWTLSKRVDICVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDWIAHVSDFGTARVLGLHSQDTISISSSAAFEGTIGYLAPEFAYMGKVSTKVDVFSFGVILMELLTKKRPTATIEVHGLPISLQQLVEGALANGKEGLIQVLDPGLVLNYSKEQQRLEELLKLALSCTDQNPENRPDMNEVLSTLLKLQRDE 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74598665 74602577 - Hsped.04g19750.1 Hepe04g1975 569113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1975 1159 Pfam Leucine rich repeat 386 445 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Pfam Leucine rich repeat 654 712 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 698 800 IPR032675 -
Hepe04g1975 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 947 1159 - -
Hepe04g1975 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 830 946 - -
Hepe04g1975 1159 SUPERFAMILY L domain-like 32 324 - -
Hepe04g1975 1159 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 526 1155 IPR051564 GO:0016020(PANTHER)
Hepe04g1975 1159 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 185 283 - -
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Hepe04g1975 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 184 - -
Hepe04g1975 1159 FunFam Inactive leucine-rich repeat receptor-like protein kinase 402 499 - -
Hepe04g1975 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 993 1005 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1975 1159 ProSiteProfiles Protein kinase domain profile. 868 1159 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1975 1159 SMART LRR_typ_2 723 746 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 336 359 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 650 673 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 216 240 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 96 120 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 747 772 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 699 722 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 288 312 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 600 624 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 528 552 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 384 408 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 432 456 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 576 599 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 674 698 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 144 168 IPR003591 -
Hepe04g1975 1159 SMART LRR_typ_2 360 383 IPR003591 -
Hepe04g1975 1159 CDD STKc_IRAK 874 1155 - -
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 378 430 IPR032675 -
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 630 697 IPR032675 -
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 522 629 IPR032675 -
Hepe04g1975 1159 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Pfam Leucine Rich Repeat 362 382 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Pfam Leucine Rich Repeat 725 747 IPR001611 GO:0005515(InterPro)
Hepe04g1975 1159 Pfam Protein kinase domain 869 1150 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1975 1159 SUPERFAMILY Protein kinase-like (PK-like) 845 1153 IPR011009 -
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 282 377 IPR032675 -
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 431 521 IPR032675 -
Hepe04g1975 1159 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 306 397 - -
Hepe04g1975 1159 FunFam LRR receptor-like serine/threonine-protein kinase EFR 500 799 - -
Hepe04g1975 1159 SMART serkin_6 868 1153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1975 1159 SUPERFAMILY RNI-like 282 626 - -
Hepe04g1975 1159 SUPERFAMILY L domain-like 545 788 - -
Hepe04g1975 1159 Gene3D Ribonuclease Inhibitor 180 281 IPR032675 -
Hepe04g1975 1159 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Hepe04g1975 1159 Gene3D Transferase(Phosphotransferase) domain 1 947 1159 - -
Hepe04g1975 1159 Gene3D Phosphorylase Kinase; domain 1 831 946 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1975 Hepe-Chr4:74598665 Hepe07g1849 Hepe-Chr7:61393411 3.71e-56 dispersed
Hepe04g1569 Hepe-Chr4:71196399 Hepe04g1975 Hepe-Chr4:74598665 1.85e-11 transposed
Hepe04g1975 Hepe-Chr4:74598665 Hepe08g0621 Hepe-Chr8:5451857 1.14e-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72776 PF00069 Pkinase 1.30E-42 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1975 K13420 - csv:101215973 1887.85