Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2016 ATGGCTTTCAGGTCTAGCAGCCACAGCAAGACGCGGGTGGGGAGGTACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAGAACGTGGCTATCAAAATCATCGACAAAGAGCATATTCTCAAGCACAAGATGATCGGGCAGATTAAACGTGAAATATCAACAATGAAACTCATTAGACATCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGAGCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTCAACAAAATTTCAAGTAATGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGGGGTGTGTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGTGCTCTAAAAATTTCAGATTTCGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCATACTACATGTGGGACGCCTAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGCTACTACGGAGCAAAGGCTGACTTATGGTCATGTGGGGTTATCCTCTTTGTTCTCATGGCAGGCTATTTGCCATTTGAAGAATCCAGTCTCATGGCGTTGTATAAAAAGAGAATTACAATTGCTGAGGTCCTCGAGAATGATTGGTTTAAGAAAGGATACAAGGCACCCACTTTTGAAAATGATGAAATCAACCTTGATGACGTTGATGACATCTTTAATGAATCAGGGGCTACTCATAACCTTGTTGTTGAAAGGCGAGAAGATAGACCCGCGTTACCTGCATCACCTGTCACCATGAATGCGTTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGGTAATTAAACGTGAAACGAGATTCACATCCAATTGTTCTGCCGATGAAATCATTTCCAAGATCGAAAAGACTGCAGTTCCTTTGGGTTTTTGTGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGTAAAGGTCATTTGTCAGTTGCAACAGAGATTTTTCAGGTTGCTCCTTCGTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGTGATACTTTAGAATTTCACAAGTTCTATCATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATATGGAGACGATGTCGAGCAGGAAACTAATGGTGCAGGTTGTTGA 1278 42.33 MAFRSSSHSKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKIIDKEHILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKSKIYIVLEFVTGGELFNKISSNGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGALKISDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEESSLMALYKKRITIAEVLENDWFKKGYKAPTFENDEINLDDVDDIFNESGATHNLVVERREDRPALPASPVTMNAFELISKSRGLNLATLFEKQMGVIKRETRFTSNCSADEIISKIEKTAVPLGFCVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFHKFYHNLSTGLKDIVWRYGDDVEQETNGAGC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74943686 74948120 + Hsped.04g20160.1 Hepe04g2016 569154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2016 425 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 395 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe04g2016 425 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Hepe04g2016 425 SMART serkin_6 16 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g2016 425 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Hepe04g2016 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g2016 425 Gene3D Kinase associated domain 1, KA1 290 411 - -
Hepe04g2016 425 ProSiteProfiles NAF domain profile. 286 310 IPR018451 GO:0007165(InterPro)
Hepe04g2016 425 Pfam Protein kinase domain 16 236 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g2016 425 FunFam Non-specific serine/threonine protein kinase 285 411 - -
Hepe04g2016 425 Gene3D Transferase(Phosphotransferase) domain 1 8 289 - -
Hepe04g2016 425 ProSiteProfiles Protein kinase domain profile. 16 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g2016 425 Pfam NAF domain 288 347 IPR004041 GO:0007165(InterPro)
Hepe04g2016 425 FunFam Non-specific serine/threonine protein kinase 9 229 - -
Hepe04g2016 425 SUPERFAMILY Protein kinase-like (PK-like) 13 248 IPR011009 -
Hepe04g2016 425 CDD CIPK_C 292 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g2016 Hepe-Chr4:74943686 Hepe08g0038 Hepe-Chr8:288362 1.28e-195 dispersed
Hepe04g2016 Hepe-Chr4:74943686 Hepe07g1747 Hepe-Chr7:59864705 1.28e-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72777 PF00069 Pkinase 4.90E-69 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2016 - - - 0.0