Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g2016 | ATGGCTTTCAGGTCTAGCAGCCACAGCAAGACGCGGGTGGGGAGGTACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAGAACGTGGCTATCAAAATCATCGACAAAGAGCATATTCTCAAGCACAAGATGATCGGGCAGATTAAACGTGAAATATCAACAATGAAACTCATTAGACATCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGAGCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTCAACAAAATTTCAAGTAATGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGGGGTGTGTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGTGCTCTAAAAATTTCAGATTTCGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCATACTACATGTGGGACGCCTAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGCTACTACGGAGCAAAGGCTGACTTATGGTCATGTGGGGTTATCCTCTTTGTTCTCATGGCAGGCTATTTGCCATTTGAAGAATCCAGTCTCATGGCGTTGTATAAAAAGAGAATTACAATTGCTGAGGTCCTCGAGAATGATTGGTTTAAGAAAGGATACAAGGCACCCACTTTTGAAAATGATGAAATCAACCTTGATGACGTTGATGACATCTTTAATGAATCAGGGGCTACTCATAACCTTGTTGTTGAAAGGCGAGAAGATAGACCCGCGTTACCTGCATCACCTGTCACCATGAATGCGTTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGGTAATTAAACGTGAAACGAGATTCACATCCAATTGTTCTGCCGATGAAATCATTTCCAAGATCGAAAAGACTGCAGTTCCTTTGGGTTTTTGTGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGTAAAGGTCATTTGTCAGTTGCAACAGAGATTTTTCAGGTTGCTCCTTCGTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGTGATACTTTAGAATTTCACAAGTTCTATCATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATATGGAGACGATGTCGAGCAGGAAACTAATGGTGCAGGTTGTTGA | 1278 | 42.33 | MAFRSSSHSKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKIIDKEHILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKSKIYIVLEFVTGGELFNKISSNGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGALKISDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEESSLMALYKKRITIAEVLENDWFKKGYKAPTFENDEINLDDVDDIFNESGATHNLVVERREDRPALPASPVTMNAFELISKSRGLNLATLFEKQMGVIKRETRFTSNCSADEIISKIEKTAVPLGFCVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFHKFYHNLSTGLKDIVWRYGDDVEQETNGAGC | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 74943686 | 74948120 | + | Hsped.04g20160.1 | Hepe04g2016 | 569154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g2016 | 425 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 6 | 395 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Hepe04g2016 | 425 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524(InterPro) | |
Hepe04g2016 | 425 | SMART | serkin_6 | 16 | 241 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe04g2016 | 425 | FunFam | Non-specific serine/threonine protein kinase | 7 | 95 | - | - | |
Hepe04g2016 | 425 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe04g2016 | 425 | Gene3D | Kinase associated domain 1, KA1 | 290 | 411 | - | - | |
Hepe04g2016 | 425 | ProSiteProfiles | NAF domain profile. | 286 | 310 | IPR018451 | GO:0007165(InterPro) | |
Hepe04g2016 | 425 | Pfam | Protein kinase domain | 16 | 236 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe04g2016 | 425 | FunFam | Non-specific serine/threonine protein kinase | 285 | 411 | - | - | |
Hepe04g2016 | 425 | Gene3D | Transferase(Phosphotransferase) domain 1 | 8 | 289 | - | - | |
Hepe04g2016 | 425 | ProSiteProfiles | Protein kinase domain profile. | 16 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe04g2016 | 425 | Pfam | NAF domain | 288 | 347 | IPR004041 | GO:0007165(InterPro) | |
Hepe04g2016 | 425 | FunFam | Non-specific serine/threonine protein kinase | 9 | 229 | - | - | |
Hepe04g2016 | 425 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 248 | IPR011009 | - | |
Hepe04g2016 | 425 | CDD | CIPK_C | 292 | 407 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g2016 | Hepe-Chr4:74943686 | Hepe08g0038 | Hepe-Chr8:288362 | 1.28e-195 | dispersed | |
Hepe04g2016 | Hepe-Chr4:74943686 | Hepe07g1747 | Hepe-Chr7:59864705 | 1.28e-236 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
72777 | PF00069 | Pkinase | 4.90E-69 | CL0016 | Hepe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g2016 | - | - | - | 0.0 |