Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2022 ATGAGGCTTTCATCTGCTGGTTTTAGTCCTCAGGCTCCAGAAGGGGAGAAGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGTCCTCTTGTTTCTCTGCCTGCTCTTGGAAGTCGGGTTGTTTATTTTGCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAAAGAAGTGGATGCCCATATACCTAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATATCGAGACGGATGAAGTGTATGCCCAGATGACCTTGCAACCGCTCAATGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCTCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGGGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTGTTTCCTCCATTGGACTTTTCTCAGCAGCCACCTGCTCAGGAGTTAATTGCTAGGGATCTGCACGACAATGAATGGAAATTTAGGCACATCTTTCGTGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCCAAGAGGCTTGTTGCTGGCGATTCCGTGATCTTTATTTGGAATGAAAAGAATCAACTACTATTGGGAATCCGCCGAGCTCATCGGCCACAAACAGTGATGCCTTCGTCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGGGCTAGTCCATCAGAGTTCATCATACCTCTGGCGAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTCGGTATGCGTTTTAGAATGCTATTTGAAACTGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGCGATTTAGATCCCACCCGGTGGTCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCGTTATGGGAGATCGAGCCACTAACAACCTTCCCGATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTGCCCTCTTACCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTGATGTGGCTACGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCTGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTCGATGCTTCTATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCGTAGATCCTGCTAAGGCGCAGGCACAGGCGGCTTCACTTCTTCAATTCCAACAAACCCAAAATCTTTCCAATAGGACTGCTACTTTCATGCCACCTCAGATGTTGCAGCAGCCTCAGCCTCATCCTCAGCAGACATTTCTTCAAGGTGAGCATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAACCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCATCAGCATCAACAACAGCAACAACAACAGCATCAACAGCAACAACATCAGCAACAACATCAGCAGCAACAACAGCATCAGCAGCAACAACAGCATCAGCAGCAACAACAACACCAGCAGCAACAACAGCATCAACAACAGCAGCAACAACAGCAGCAACAACAGCATCAGCATCAGCAGCAAGTGTTTGATCACCAACAAATTCCAAGCACCATCTCTACAATGTCACAGTTCGGTTCGGCATCACATTCCCAAGCCCAATCTCTGCAAACTATTCCTCCATTATGCCGGCAGCAGAGTTTTTCCGATTCAAATGCCAACCATGTGACGAGTCCGATCATTTCACCATTGCATAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACATGGCCGTCAAAGCGAGCTGCAGTCGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAATATGGGAACAACTCAGACTAATATCTCTCAGAATGCTATTTCGTTGCCGCCTTTTCCTGGTAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGATAGTGACTCAACAGCTGTACATTTTTCGTCCAATTATGTGAATACTGCTGGTACCAACTTCTCTTCCAATCCAACTGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAATAAACCCACCAACCAGAACCTTTGTAAAGGTTTATAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGTTACGCAGTGAGCTCGCTCACATGTTCAGTCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCTTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACGAGGCCTAGAGCTCTTGAACTCGGTCCCGATTCAGAGGCTCTCGAATGGCAGTTGTGATAACTATGCCAACAGACAGGAATCATCCAGAAATTTGAGTACGGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2862 47.0 MRLSSAGFSPQAPEGEKRVLNSELWHACAGPLVSLPALGSRVVYFAQGHSEQVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLNAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRAHRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPTRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSYHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAQAASLLQFQQTQNLSNRTATFMPPQMLQQPQPHPQQTFLQGEHENQHLSHSQAQTQPTVLQQEIKHQTFNNHHQHQQQQQQQHQQQQHQQQHQQQQQHQQQQQHQQQQQHQQQQQHQQQQQQQQQQQHQHQQQVFDHQQIPSTISTMSQFGSASHSQAQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAVHFSSNYVNTAGTNFSSNPTGTPSNCIEDSGFLQSPENTGQINPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75005464 75010722 - Hsped.04g20220.1 Hepe04g2022 569160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2022 953 Gene3D - 816 908 - -
Hepe04g2022 953 Gene3D - 291 363 - -
Hepe04g2022 953 SUPERFAMILY CAD & PB1 domains 811 894 - -
Hepe04g2022 953 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 910 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe04g2022 953 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Hepe04g2022 953 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Hepe04g2022 953 Pfam AUX/IAA family 817 908 IPR033389 -
Hepe04g2022 953 ProSiteProfiles PB1 domain profile. 819 903 IPR053793 -
Hepe04g2022 953 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Hepe04g2022 953 MobiDBLite consensus disorder prediction 530 597 - -
Hepe04g2022 953 Gene3D - 125 228 IPR015300 -
Hepe04g2022 953 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe04g2022 953 FunFam Auxin response factor 291 363 - -
Hepe04g2022 953 FunFam Auxin response factor 815 908 - -
Hepe04g2022 953 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Hepe04g2022 953 FunFam Auxin response factor 125 229 - -
Hepe04g2022 953 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g2022 Hepe-Chr4:75005464 Hepe08g2709 Hepe-Chr8:69072305 3.24e-190 dispersed
Hepe02g2436 Hepe-Chr2:70453552 Hepe04g2022 Hepe-Chr4:75005464 0.0 transposed
Hepe08g2070 Hepe-Chr8:58170051 Hepe04g2022 Hepe-Chr4:75005464 8.51e-185 transposed
Hepe04g2022 Hepe-Chr4:75005464 Hepe07g1742 Hepe-Chr7:59763079 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55517 PF02309 AUX_IAA 1.90E-07 CL0072 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2022 K14486 - vvi:100260866 1119.76