Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2047 ATGGCACTTGTTTTGCACAAAGATTCACCAAACAAACAGATGGATTCAAGCAAATATGTACGGTATACACCAGAACAAGTTGAGGCATTAGAGAGAGTTTATTCAGAATGTCCAAAGCCCAGTTCTCTTAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTCTCTAACATAGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGTCGGGAGAAGCAGAGGAAGGAATCTTCTCGCCTCCAGAGCGTAAATCGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAAAAGCAAGTGTCCCATTTGGTGTATGAGAATGGATTTATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGCTAACAACCCAGCTGGTCTTCTTGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTTAAAGATCGCCTTTCGTGGTATCGCGACTGCCGCTGTCTTAATGTTTTAAGCGTAATCCCTACAGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTATGCTCCTACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTAACTTCTTCAAGTGGTGGCCCAGCTGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAAATGCTTCCTAGCGGCTATTTAATACGAGCGTGCGAAGGCGGTGGATCGATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAAAAAATAACAATTGCTGCATTACGTCACATTAGACAAATTGCTCAAGAGACTAATGGAGAGATTCAATATAGTGGTGGACGTCAACCAGCTGTACTACGGACGTTTAGTCAAAAACTTTGCAGGGGTTTCAATGATGCTGTTAATGGGTTTGCGGATGATGGTTGGTCACCTATGGGCAGTGATGGTTTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTATAACACGTCTATGTATCCCTCTTTTGGCGGCGGAGTGATGTGCGCAAAAGCATCGATGTTGCTTCAGAATGTTCCTCCTGCTCTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCCGCTAGTTTAAAAGCCAGTCCATATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCAAGCAGCCAGGTTATTTTGCCTCTTGCTCAAACTGTGGAGCACGAGGAGTCTTTGGAGGTGGTTCGGCTGGAGGGCCTTGCGTTCTCCCCTGAAGACGTTGCTTTGGCTGGACGGGATATGTACTTATTGCAGCTCTGTAGTGGAGTTGATGAGAATGCAGCTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCTCTTCTTCCTTCTGGGTTTCGTGTCATACCGCTGGATCCTAAAACGGATGAACCTACTGCTGCTCGAACATTGGATTTGGCCTCTACTCTTGAAGTTGGTGCCAATGCTGCACGTTCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGGTCAGTCTTGACTATTGCCTTCCAGTTCACTTTTGAGAATCACTTGCGGGAAAATGTGGCTGCTATGGCTCGACAATACGTTCGTAGTGTTGTGGGGTCTGTTCAGAGGGTTGCCATGGCCATTTCCCCATCACGGTTGAGTTCCAATATGGGACTAAAGCCCCTTCCTGGTTCTCCTGAAGCTCTTACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAGCTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGCAGCTCTGGCACCACTCAGATGCAATCATGTGTTGCTCCGTAAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACACTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGATGAAGCGGGTCGGAAGATTCTGTGCTCTGAATTCCCCAAAATAATGCAACAGGGATTTGCAAATCTTCCATCTGGTATTTGCGTATCCAGTATGGGCCGTCCCATTTCTTACGAGCAAGCTGTTGCCTGGAAGGTTCTAAACGATGATGATTCCAACCACTGTCTAGCTTTCATGTTCATAAACTGGTCTTTTGTGTGA 2544 46.89 MALVLHKDSPNKQMDSSKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGFMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDANNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTSSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKITIAALRHIRQIAQETNGEIQYSGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANKFPGSQYNTSMYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAQTVEHEESLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAAGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLRENVAAMARQYVRSVVGSVQRVAMAISPSRLSSNMGLKPLPGSPEALTLARWICRSYRIHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICVSSMGRPISYEQAVAWKVLNDDDSNHCLAFMFINWSFV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75327603 75333799 - Hsped.04g20470.1 Hepe04g2047 569185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2047 847 CDD START_ArGLABRA2_like 161 377 - -
Hepe04g2047 847 Pfam MEKHLA domain 702 846 IPR013978 -
Hepe04g2047 847 Gene3D - 200 384 IPR023393 -
Hepe04g2047 847 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Hepe04g2047 847 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
Hepe04g2047 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Hepe04g2047 847 Gene3D - 10 85 - -
Hepe04g2047 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Hepe04g2047 847 MobiDBLite consensus disorder prediction 123 160 - -
Hepe04g2047 847 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Hepe04g2047 847 SUPERFAMILY Bet v1-like 167 378 - -
Hepe04g2047 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Hepe04g2047 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 847 IPR044830 GO:0003700(InterPro)
Hepe04g2047 847 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Hepe04g2047 847 MobiDBLite consensus disorder prediction 123 157 - -
Hepe04g2047 847 CDD bZIP 70 109 - -
Hepe04g2047 847 Coils Coil 83 107 - -
Hepe04g2047 847 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Hepe04g2047 847 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g2047 Hepe-Chr4:75327603 Hepe08g0890 Hepe-Chr8:8076955 0.0 dispersed
Hepe01g2216 Hepe-Chr1:86853700 Hepe04g2047 Hepe-Chr4:75327603 0.0 transposed
Hepe03g1517 Hepe-Chr3:72054457 Hepe04g2047 Hepe-Chr4:75327603 0.0 transposed
Hepe04g2047 Hepe-Chr4:75327603 Hepe07g1716 Hepe-Chr7:59032528 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55519 PF01852 START 2.30E-49 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2047 K09338 - csv:101210154 1634.77