Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g2048 | ATGACTTCTTCTGTCCACGATTATTCTGATAACGGCGAAGCTGATGAGCAGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCATCACAACCCCAAATCCGTATGTAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCTTATGATTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTCCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGAAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATCAAAATGAAGTGGCATCAGGTGATAAATCACAGTCCAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA | 591 | 42.64 | MTSSVHDYSDNGEADEQQKYSESQNHSSSVINGLNQPSITTPNPYVVGAGHAMAPPAYPYPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNQNEVASGDKSQSNINLNSDKSDLASSEN | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 75341307 | 75351206 | - | Hsped.04g20480.1 | Hepe04g2048 | 569186 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g2048 | 196 | PRINTS | CCAAT-binding transcription factor subunit B signature | 110 | 132 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g2048 | 196 | PRINTS | CCAAT-binding transcription factor subunit B signature | 141 | 164 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g2048 | 196 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 15 | 184 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Hepe04g2048 | 196 | MobiDBLite | consensus disorder prediction | 166 | 196 | - | - | |
Hepe04g2048 | 196 | MobiDBLite | consensus disorder prediction | 167 | 196 | - | - | |
Hepe04g2048 | 196 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Hepe04g2048 | 196 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 109 | 164 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g2048 | 196 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 112 | 132 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Hepe04g2048 | 196 | Gene3D | - | 107 | 168 | - | - | |
Hepe04g2048 | 196 | ProSiteProfiles | NF-YA/HAP2 family profile. | 107 | 167 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g2048 | 196 | SMART | cbf3 | 106 | 167 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g2048 | 196 | MobiDBLite | consensus disorder prediction | 21 | 43 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1747 | Hepe-Chr3:74366405 | Hepe04g2048 | Hepe-Chr4:75341307 | 3.86e-34 | dispersed | |
Hepe04g2048 | Hepe-Chr4:75341307 | Hepe08g2684 | Hepe-Chr8:68857174 | 3.44e-32 | dispersed | |
Hepe04g2048 | Hepe-Chr4:75341307 | Hepe08g0129 | Hepe-Chr8:1100717 | 1.38e-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55520 | PF02045 | CBFB_NFYA | 3.80E-26 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g2048 | K08064 | - | csv:101205549 | 330.102 |