Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2048 ATGACTTCTTCTGTCCACGATTATTCTGATAACGGCGAAGCTGATGAGCAGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCATCACAACCCCAAATCCGTATGTAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCTTATGATTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTCCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGAAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATCAAAATGAAGTGGCATCAGGTGATAAATCACAGTCCAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 591 42.64 MTSSVHDYSDNGEADEQQKYSESQNHSSSVINGLNQPSITTPNPYVVGAGHAMAPPAYPYPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNQNEVASGDKSQSNINLNSDKSDLASSEN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75341307 75351206 - Hsped.04g20480.1 Hepe04g2048 569186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2048 196 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 184 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe04g2048 196 MobiDBLite consensus disorder prediction 166 196 - -
Hepe04g2048 196 MobiDBLite consensus disorder prediction 167 196 - -
Hepe04g2048 196 MobiDBLite consensus disorder prediction 1 43 - -
Hepe04g2048 196 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Hepe04g2048 196 Gene3D - 107 168 - -
Hepe04g2048 196 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 SMART cbf3 106 167 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 MobiDBLite consensus disorder prediction 21 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1747 Hepe-Chr3:74366405 Hepe04g2048 Hepe-Chr4:75341307 3.86e-34 dispersed
Hepe04g2048 Hepe-Chr4:75341307 Hepe08g2684 Hepe-Chr8:68857174 3.44e-32 dispersed
Hepe04g2048 Hepe-Chr4:75341307 Hepe08g0129 Hepe-Chr8:1100717 1.38e-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55520 PF02045 CBFB_NFYA 3.80E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2048 K08064 - csv:101205549 330.102