Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2048 ATGACTTCTTCTGTCCACGATTATTCTGATAACGGCGAAGCTGATGAGCAGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCATCACAACCCCAAATCCGTATGTAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCTTATGATTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTCCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGAAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATCAAAATGAAGTGGCATCAGGTGATAAATCACAGTCCAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 591 42.64 MTSSVHDYSDNGEADEQQKYSESQNHSSSVINGLNQPSITTPNPYVVGAGHAMAPPAYPYPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNQNEVASGDKSQSNINLNSDKSDLASSEN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75341307 75351206 - Hsped.04g20480.1 Hepe04g2048 569186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2048 196 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 184 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe04g2048 196 MobiDBLite consensus disorder prediction 166 196 - -
Hepe04g2048 196 MobiDBLite consensus disorder prediction 167 196 - -
Hepe04g2048 196 MobiDBLite consensus disorder prediction 1 43 - -
Hepe04g2048 196 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Hepe04g2048 196 Gene3D - 107 168 - -
Hepe04g2048 196 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 SMART cbf3 106 167 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g2048 196 MobiDBLite consensus disorder prediction 21 43 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2048 K08064 - - csv:101205549 330.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1747 Hepe-Chr3:74366405 Hepe04g2048 Hepe-Chr4:75341307 3.86e-34 dispersed
Hepe04g2048 Hepe-Chr4:75341307 Hepe08g2684 Hepe-Chr8:68857174 3.44e-32 dispersed
Hepe04g2048 Hepe-Chr4:75341307 Hepe08g0129 Hepe-Chr8:1100717 1.38e-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g0129 . 28 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.6 1.5e-58 223.4
Hepe09g1122 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 1.1e-46 184.1
Hepe04g2048 . 1 194 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.6 1.4e-47 186.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55520 PF02045 CBFB_NFYA 3.80E-26 No_clan Hepe TF